Analysis of interatomic Contacts of Structural Units in PDB entry:
5NAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NAP entry

There is 1 chain in PDB entry 5NAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 4THR 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5NAP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
40 44Right-handed 310
Helix 2
AA2
A
78 83Right-handed alpha
Helix 3
AA3
A
127 131Right-handed 310
Helix 4
AA4
A
132 140Right-handed alpha
Helix 5
AA5
A
151 156Right-handed alpha
Helix 6
AA6
A
167 184Right-handed alpha
Helix 7
AA7
A
185 187Right-handed 310
Helix 8
AA8
A
200 212Right-handed alpha
Helix 9
AA9
A
215 219Right-handed 310
Helix 10
AB1
A
238 252Right-handed alpha
Helix 11
AB2
A
258 269Right-handed alpha
Helix 12
AB3
A
270 279Right-handed alpha
Helix 13
AB4
A
280 282Right-handed 310
Helix 14
AB5
A
304 312Right-handed alpha
Helix 15
AB6
A
328 336Right-handed alpha
Helix 16
AB7
A
348 360Right-handed alpha
Helix 17
AB8
A
364 376Right-handed alpha
Helix 18
AB9
A
383 400Right-handed alpha
Helix 19
AC1
A
400 415Right-handed alpha
Helix 20
AC2
A
433 437Right-handed 310
Helix 21
AC3
A
443 448Right-handed alpha
Helix 22
AC4
A
449 457Right-handed 310
Helix 23
AC5
A
459 480Right-handed alpha
Helix 24
AC6
A
517 526Right-handed alpha
Helix 25
AC7
A
526 535Right-handed alpha
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There are 3 sheets in PDB entry 5NAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
57 59parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 22first strand
Strand 2
A
25 34anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
142 145anti-parallel
Strand 5
A
109 115parallel
Strand 6
A
189 199parallel
Strand 7
A
221 225parallel
Strand 8
A
319 324parallel
Strand 9
A
418 423parallel
Strand 10
A
501 505parallel
Strand 11
A
512 514anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
236 237first strand
Strand 2
A
295 296parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il