Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NJ6 entry

There are 3 chains in PDB entry 5NJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 59LEU 359
H
GLU 1ARG 219
L
GLN 1ASN 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5NJ6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
62 69Right-handed alpha
Helix 2
AA2
A
71 76Right-handed alpha
Helix 3
AA3
A
76 103Right-handed alpha
Helix 4
AA4
A
108 126Right-handed alpha
Helix 5
AA5
A
127 137Right-handed alpha
Helix 6
AA6
A
144 179Right-handed alpha
Helix 7
AA7
A
185 206Right-handed alpha
Helix 8
AA8
A
206 211Right-handed alpha
Helix 9
AA9
A
232 234Right-handed 310
Helix 10
AB1
A
235 250Right-handed alpha
Helix 11
AB2
A
251 2019Right-handed alpha
Helix 12
AB3
A
2021 2042Right-handed alpha
Helix 13
AB4
A
2054 2081Right-handed alpha
Helix 14
AB5
A
2088 2100Right-handed alpha
Helix 15
AB6
A
2100 2105Right-handed alpha
Helix 16
AB7
A
278 299Right-handed alpha
Helix 17
AB8
A
300 317Right-handed alpha
Helix 18
AB9
A
322 334Right-handed alpha
Helix 19
AC1
A
335 348Right-handed alpha
Helix 20
AC2
A
348 359Right-handed alpha
Helix 21
AC3
H
28 32Right-handed 310
Helix 22
AC4
H
87 91Right-handed 310
Helix 23
AC5
L
121 128Right-handed alpha
Helix 24
AC6
L
182 187Right-handed alpha
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There are 11 sheets in PDB entry 5NJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 218first strand
Strand 2
A
223 226anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
21 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
17 18anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
21 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
69 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 117parallel
Strand 3
H
93 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 59anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 117parallel
Strand 3
H
93 99anti-parallel
Strand 4
H
106 109anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
126 130first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
180 190anti-parallel
Strand 4
H
169 177anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
157 160first strand
Strand 2
H
200 205anti-parallel
Strand 3
H
210 215anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 28anti-parallel
Strand 3
L
65 75anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 89anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
114 118first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
153 155first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
209 210anti-parallel
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