Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NJ8 entry

There are 6 chains in PDB entry 5NJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 34LEU 272
B
ASP 85VAL 345
C
LYS 32PRO 271
D
ALA 84ARG 342
E
G 1 C 12
F
G 1 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5NJ8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
34 53Right-handed alpha
Helix 2
AA2
A
57 62Right-handed alpha
Helix 3
AA3
A
65 87Right-handed alpha
Helix 4
AA4
A
112 122Right-handed alpha
Helix 5
AA5
A
141 147Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
157 162Right-handed 310
Helix 8
AA8
A
163 175Right-handed alpha
Helix 9
AA9
B
86 113Right-handed alpha
Helix 10
AB1
B
127 143Right-handed alpha
Helix 11
AB2
B
160 172Right-handed alpha
Helix 12
AB3
B
191 194Right-handed 310
Helix 13
AB4
B
208 213Right-handed 310
Helix 14
AB5
B
214 216Right-handed 310
Helix 15
AB6
B
217 223Right-handed alpha
Helix 16
AB7
C
34 53Right-handed alpha
Helix 17
AB8
C
57 62Right-handed alpha
Helix 18
AB9
C
65 88Right-handed alpha
Helix 19
AC1
C
109 122Right-handed alpha
Helix 20
AC2
C
141 146Right-handed alpha
Helix 21
AC3
C
149 154Right-handed alpha
Helix 22
AC4
C
157 162Right-handed 310
Helix 23
AC5
C
163 173Right-handed alpha
Helix 24
AC6
D
86 116Right-handed alpha
Helix 25
AC7
D
116 121Right-handed alpha
Helix 26
AC8
D
127 143Right-handed alpha
Helix 27
AC9
D
160 173Right-handed alpha
Helix 28
AD1
D
190 194Right-handed 310
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There are 6 sheets in PDB entry 5NJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 138first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
262 270anti-parallel
Strand 4
A
235 246anti-parallel
Strand 5
A
217 224anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
186 189first strand
Strand 2
B
174 180anti-parallel
Strand 3
B
335 343anti-parallel
Strand 4
B
304 314anti-parallel
Strand 5
B
260 267anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
135 138first strand
Strand 2
C
126 130anti-parallel
Strand 3
C
263 268anti-parallel
Strand 4
C
240 241anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
135 138first strand
Strand 2
C
126 130anti-parallel
Strand 3
C
263 268anti-parallel
Strand 4
C
244 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
221 222first strand
Strand 2
C
237 238anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
308 311first strand
Strand 2
D
338 341anti-parallel
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