Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NNZ entry

There are 2 chains in PDB entry 5NNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 81	ARG 415
A	THR 81	ARG 415

There are 2 helices in PDB entry 5NNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	187	189	Right-handed 310
Helix 2	AA2	A	187	190	Right-handed 310

There are 16 sheets in PDB entry 5NNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	410	415	anti-parallel
Strand 3	B	402	406	anti-parallel
Strand 4	B	390	395	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	126	130	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	142	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	159	163	anti-parallel
Strand 4	B	169	173	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	191	196	anti-parallel
Strand 3	B	200	205	anti-parallel
Strand 4	B	211	216	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	227	first strand
Strand 2	B	233	238	anti-parallel
Strand 3	B	243	247	anti-parallel
Strand 4	B	253	257	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	269	first strand
Strand 2	B	275	280	anti-parallel
Strand 3	B	285	289	anti-parallel
Strand 4	B	295	299	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	311	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	337	341	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	369	373	anti-parallel
Strand 4	B	379	383	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	411	415	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	390	395	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	106	111	anti-parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	126	130	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	142	first strand
Strand 2	A	149	154	anti-parallel
Strand 3	A	158	163	anti-parallel
Strand 4	A	169	174	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	201	204	anti-parallel
Strand 4	A	211	215	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	253	258	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	269	first strand
Strand 2	A	275	280	anti-parallel
Strand 3	A	285	289	anti-parallel
Strand 4	A	295	299	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	311	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	337	341	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	353	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	369	373	anti-parallel
Strand 4	A	379	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNZ