Analysis of interatomic Contacts of Structural Units in PDB entry:
5NO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NO2 entry

There are 28 chains in PDB entry 5NO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
A 1 G 515
A
G 517 C 526
A
C 528 U 965
A
A 968 G 1206
A
C 1208 G 1401
A
C 1403 U 1406
A
A 1408 G 1497
A
A 1499 G 1515
A
G 1517 G 1517
A
C 1520 A 1534
D
ALA 2LYS 206
E
GLU 10ILE 164
F
MET 1LYS 106
G
PRO 2LYS 131
H
SER 2ALA 130
I
ASN 4ARG 130
J
GLN 4LEU 102
K
ARG 13VAL 129
L
ALA 2LYS 15
M
ALA 2PRO 115
N
ALA 2TRP 101
O
SER 2ARG 89
P
MET 1ALA 82
Q
LYS 4VAL 83
R
GLU 20HIS 74
S
ARG 3ARG 81
T
ALA 2ALA 87
Z
ASN 34SER 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 5NO2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
D
7 16Right-handed alpha
Helix 2
AA2
D
51 66Right-handed alpha
Helix 3
AA3
D
68 82Right-handed alpha
Helix 4
AA4
D
85 96Right-handed alpha
Helix 5
AA5
D
97 106Right-handed alpha
Helix 6
AA6
D
110 120Right-handed alpha
Helix 7
AA7
D
152 157Right-handed alpha
Helix 8
AA8
D
160 165Right-handed alpha
Helix 9
AA9
D
197 202Right-handed alpha
Helix 10
AB1
E
55 67Right-handed alpha
Helix 11
AB2
E
108 118Right-handed alpha
Helix 12
AB3
E
132 146Right-handed alpha
Helix 13
AB4
E
149 158Right-handed alpha
Helix 14
AB5
F
12 16Right-handed 310
Helix 15
AB6
F
17 32Right-handed alpha
Helix 16
AB7
F
69 81Right-handed alpha
Helix 17
AB8
G
20 31Right-handed alpha
Helix 18
AB9
G
35 53Right-handed alpha
Helix 19
AC1
G
57 69Right-handed alpha
Helix 20
AC2
G
95 110Right-handed alpha
Helix 21
AC3
G
115 129Right-handed alpha
Helix 22
AC4
H
5 20Right-handed alpha
Helix 23
AC5
H
30 42Right-handed alpha
Helix 24
AC6
H
95 99Right-handed 310
Helix 25
AC7
H
114 120Right-handed alpha
Helix 26
AC8
I
35 39Right-handed alpha
Helix 27
AC9
I
41 48Right-handed alpha
Helix 28
AD1
I
71 91Right-handed alpha
Helix 29
AD2
I
94 102Right-handed alpha
Helix 30
AD3
J
14 32Right-handed alpha
Helix 31
AD4
J
80 88Right-handed alpha
Helix 32
AD5
K
61 72Right-handed alpha
Helix 33
AD6
K
73 78Right-handed 310
Helix 34
AD7
K
97 102Right-handed alpha
Helix 35
AD8
L
3 10Right-handed alpha
Helix 36
AD9
M
14 19Right-handed alpha
Helix 37
AE1
M
26 38Right-handed alpha
Helix 38
AE2
M
49 61Right-handed alpha
Helix 39
AE3
M
66 84Right-handed alpha
Helix 40
AE4
M
85 94Right-handed alpha
Helix 41
AE5
M
106 111Right-handed alpha
Helix 42
AE6
N
3 18Right-handed alpha
Helix 43
AE7
N
23 32Right-handed alpha
Helix 44
AE8
N
43 50Right-handed alpha
Helix 45
AE9
N
52 56Right-handed 310
Helix 46
AF1
N
80 90Right-handed alpha
Helix 47
AF2
O
4 16Right-handed alpha
Helix 48
AF3
O
24 39Right-handed alpha
Helix 49
AF4
O
39 46Right-handed alpha
Helix 50
AF5
O
49 74Right-handed alpha
Helix 51
AF6
O
74 85Right-handed alpha
Helix 52
AF7
P
53 62Right-handed alpha
Helix 53
AF8
P
68 79Right-handed alpha
Helix 54
AF9
R
25 31Right-handed alpha
Helix 55
AG1
R
41 46Right-handed alpha
Helix 56
AG2
R
48 65Right-handed alpha
Helix 57
AG3
S
12 25Right-handed alpha
Helix 58
AG4
S
41 45Right-handed 310
Helix 59
AG5
S
63 67Right-handed 310
Helix 60
AG6
S
70 75Right-handed 310
Helix 61
AG7
T
4 42Right-handed alpha
Helix 62
AG8
T
43 61Right-handed alpha
Helix 63
AG9
T
68 87Right-handed alpha
Helix 64
AH1
Z
138 150Right-handed alpha
Helix 65
AH2
Z
161 165Right-handed 310
Helix 66
AH3
Z
166 183Right-handed alpha
Helix 67
AH4
Z
197 204Right-handed alpha
Helix 68
AH5
Z
219 229Right-handed alpha
Helix 69
AH6
Z
280 285Right-handed alpha
Helix 70
AH7
Z
310 319Right-handed alpha
Helix 71
AH8
Z
322 336Right-handed alpha
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There are 17 sheets in PDB entry 5NO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 129first strand
Strand 2
D
123 125anti-parallel
Strand 3
D
141 145anti-parallel
Strand 4
D
179 182anti-parallel
Strand 5
D
171 174anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
14 24first strand
Strand 2
E
29 40anti-parallel
Strand 3
E
45 53anti-parallel
Strand 4
E
71 73anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
86 87first strand
Strand 2
E
92 98anti-parallel
Strand 3
E
123 129anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 45first strand
Strand 2
F
57 65anti-parallel
Strand 3
F
3 10anti-parallel
Strand 4
F
84 91anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
24 28first strand
Strand 2
H
58 62anti-parallel
Strand 3
H
49 52anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
74 77first strand
Strand 2
H
124 130anti-parallel
Strand 3
H
101 106anti-parallel
Strand 4
H
109 112anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
6 7first strand
Strand 2
I
16 23anti-parallel
Strand 3
I
10 11anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
6 7first strand
Strand 2
I
16 23anti-parallel
Strand 3
I
61 68anti-parallel
Strand 4
I
28 30parallel
Strand 5
I
33 34anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
36 41first strand
Strand 2
J
62 76anti-parallel
Strand 3
J
6 12anti-parallel
Strand 4
J
96 101anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
45 52first strand
Strand 2
J
62 76anti-parallel
Strand 3
N
97 98anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
41 46first strand
Strand 2
K
31 35anti-parallel
Strand 3
K
18 24anti-parallel
Strand 4
K
81 87parallel
Strand 5
K
106 112parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
50 51first strand
Strand 2
P
32 39anti-parallel
Strand 3
P
16 22anti-parallel
Strand 4
P
3 9anti-parallel
Strand 5
P
66 67parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
7 14first strand
Strand 2
Q
20 30anti-parallel
Strand 3
Q
37 47anti-parallel
Strand 4
Q
73 80parallel
Strand 5
Q
58 63anti-parallel
Strand 6
Q
7 14anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
31 33first strand
Strand 2
S
48 52parallel
Strand 3
S
57 61anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
40 47first strand
Strand 2
Z
52 55anti-parallel
Strand 3
Z
61 66anti-parallel
Strand 4
Z
95 100parallel
Strand 5
Z
78 82anti-parallel
Strand 6
Z
40 47anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
106 109first strand
Strand 2
Z
117 121anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
187 189first strand
Strand 2
Z
154 160parallel
Strand 3
Z
125 131parallel
Strand 4
Z
210 213parallel
Strand 5
Z
263 266parallel
Strand 6
Z
255 257anti-parallel
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