Analysis of interatomic Contacts of Structural Units in PDB entry:
5NRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NRO entry

There are 2 chains in PDB entry 5NRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLN 604
B
 LYS 3ALA 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5NRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 57Right-handed alpha
Helix 2
AA2
A
61 63Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
79 89Right-handed alpha
Helix 5
AA5
A
111 132Right-handed alpha
Helix 6
AA6
A
147 161Right-handed alpha
Helix 7
AA7
A
171 181Right-handed alpha
Helix 8
AA8
A
228 249Right-handed alpha
Helix 9
AA9
A
255 274Right-handed alpha
Helix 10
AB1
A
302 316Right-handed alpha
Helix 11
AB2
A
317 328Right-handed alpha
Helix 12
AB3
A
330 334Right-handed 310
Helix 13
AB4
A
341 345Right-handed 310
Helix 14
AB5
A
346 358Right-handed alpha
Helix 15
AB6
A
369 384Right-handed alpha
Helix 16
AB7
A
404 406Right-handed 310
Helix 17
AB8
A
447 451Right-handed 310
Helix 18
AB9
A
508 554Right-handed alpha
Helix 19
AC1
A
558 578Right-handed alpha
Helix 20
AC2
A
580 603Right-handed alpha
Helix 21
AC3
B
5 11Right-handed alpha
Helix 22
AC4
B
17 33Right-handed alpha
Helix 23
AC5
B
33 38Right-handed alpha
Helix 24
AC6
B
40 59Right-handed alpha
Helix 25
AC7
B
59 65Right-handed alpha
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There are 8 sheets in PDB entry 5NRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
36 37anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
4 8anti-parallel
Strand 4
A
137 142parallel
Strand 5
A
164 170parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
65 66anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
108 110anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
187 195parallel
Strand 3
A
200 210anti-parallel
Strand 4
A
213 224anti-parallel
Strand 5
A
389 392parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 288first strand
Strand 2
A
293 301anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 412first strand
Strand 2
A
399 402anti-parallel
Strand 3
A
436 442anti-parallel
Strand 4
A
452 459anti-parallel
Strand 5
A
500 502anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 426first strand
Strand 2
A
472 478anti-parallel
Strand 3
A
484 490anti-parallel
Strand 4
A
496 497anti-parallel
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