Analysis of interatomic Contacts of Structural Units in PDB entry:
5NS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NS3 entry

There are 4 chains in PDB entry 5NS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 5ARG 181
B
VAL 5ARG 181
C
C 26 G 58
D
C 26 G 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5NS3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
14 24Right-handed alpha
Helix 3
AA3
A
27 31Right-handed 310
Helix 4
AA4
A
53 65Right-handed alpha
Helix 5
AA5
A
95 109Right-handed alpha
Helix 6
AA6
A
165 176Right-handed alpha
Helix 7
AA7
B
6 14Right-handed alpha
Helix 8
AA8
B
14 24Right-handed alpha
Helix 9
AA9
B
27 31Right-handed 310
Helix 10
AB1
B
53 65Right-handed alpha
Helix 11
AB2
B
95 109Right-handed alpha
Helix 12
AB3
B
109 114Right-handed alpha
Helix 13
AB4
B
165 177Right-handed alpha
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There are 2 sheets in PDB entry 5NS3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 71first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
34 42anti-parallel
Strand 4
A
155 161anti-parallel
Strand 5
A
131 134anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
69 72first strand
Strand 2
B
87 94anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
156 161anti-parallel
Strand 5
B
131 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il