Analysis of interatomic Contacts of Structural Units in PDB entry:
5NSR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NSR entry

There are 8 chains in PDB entry 5NSR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	VAL 237
B	SER 4	ARG 238
C	MET 1	ASP 1341
D	GLU 15	GLY 1376
E	ALA 2	GLN 75
M	UNK 16	ARG 473
F	T 71	C 95
G	G -33	G -5

There are116 helices in PDB entry 5NSR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	154	163	Right-handed alpha
Helix 5	AA5	A	212	233	Right-handed alpha
Helix 6	AA6	B	35	50	Right-handed alpha
Helix 7	AA7	B	77	86	Right-handed alpha
Helix 8	AA8	B	113	115	Right-handed 310
Helix 9	AA9	B	212	229	Right-handed alpha
Helix 10	AB1	C	28	39	Right-handed alpha
Helix 11	AB2	C	48	57	Right-handed alpha
Helix 12	AB3	C	81	89	Right-handed alpha
Helix 13	AB4	C	206	213	Right-handed alpha
Helix 14	AB5	C	216	225	Right-handed alpha
Helix 15	AB6	C	270	280	Right-handed alpha
Helix 16	AB7	C	318	327	Right-handed alpha
Helix 17	AB8	C	347	354	Right-handed alpha
Helix 18	AB9	C	358	371	Right-handed alpha
Helix 19	AC1	C	380	389	Right-handed alpha
Helix 20	AC2	C	397	409	Right-handed alpha
Helix 21	AC3	C	421	438	Right-handed alpha
Helix 22	AC4	C	447	449	Right-handed 310
Helix 23	AC5	C	455	482	Right-handed alpha
Helix 24	AC6	C	494	508	Right-handed alpha
Helix 25	AC7	C	518	528	Right-handed alpha
Helix 26	AC8	C	551	555	Right-handed 310
Helix 27	AC9	C	607	614	Right-handed alpha
Helix 28	AD1	C	656	661	Right-handed 310
Helix 29	AD2	C	675	686	Right-handed alpha
Helix 30	AD3	C	703	712	Right-handed alpha
Helix 31	AD4	C	820	825	Right-handed alpha
Helix 32	AD5	C	858	865	Right-handed alpha
Helix 33	AD6	C	895	907	Right-handed alpha
Helix 34	AD7	C	945	979	Right-handed alpha
Helix 35	AD8	C	985	990	Right-handed alpha
Helix 36	AD9	C	993	1000	Right-handed alpha
Helix 37	AE1	C	1004	1039	Right-handed alpha
Helix 38	AE2	C	1081	1085	Right-handed 310
Helix 39	AE3	C	1101	1107	Right-handed alpha
Helix 40	AE4	C	1109	1135	Right-handed alpha
Helix 41	AE5	C	1137	1151	Right-handed alpha
Helix 42	AE6	C	1168	1176	Right-handed alpha
Helix 43	AE7	C	1191	1202	Right-handed alpha
Helix 44	AE8	C	1238	1243	Right-handed alpha
Helix 45	AE9	C	1271	1282	Right-handed alpha
Helix 46	AF1	C	1284	1292	Right-handed alpha
Helix 47	AF2	C	1297	1311	Right-handed alpha
Helix 48	AF3	C	1320	1333	Right-handed alpha
Helix 49	AF4	D	26	33	Right-handed alpha
Helix 50	AF5	D	94	100	Right-handed 310
Helix 51	AF6	D	122	129	Right-handed alpha
Helix 52	AF7	D	131	139	Right-handed alpha
Helix 53	AF8	D	161	173	Right-handed alpha
Helix 54	AF9	D	182	192	Right-handed alpha
Helix 55	AG1	D	193	208	Right-handed alpha
Helix 56	AG2	D	210	231	Right-handed alpha
Helix 57	AG3	D	233	238	Right-handed 310
Helix 58	AG4	D	246	250	Right-handed 310
Helix 59	AG5	D	265	286	Right-handed alpha
Helix 60	AG6	D	288	308	Right-handed alpha
Helix 61	AG7	D	326	332	Right-handed alpha
Helix 62	AG8	D	377	389	Right-handed alpha
Helix 63	AG9	D	393	403	Right-handed alpha
Helix 64	AH1	D	406	419	Right-handed alpha
Helix 65	AH2	D	430	434	Right-handed 310
Helix 66	AH3	D	450	458	Right-handed alpha
Helix 67	AH4	D	472	483	Right-handed alpha
Helix 68	AH5	D	504	514	Right-handed alpha
Helix 69	AH6	D	530	538	Right-handed alpha
Helix 70	AH7	D	573	581	Right-handed alpha
Helix 71	AH8	D	588	592	Right-handed 310
Helix 72	AH9	D	599	613	Right-handed alpha
Helix 73	AI1	D	613	636	Right-handed alpha
Helix 74	AI2	D	648	671	Right-handed alpha
Helix 75	AI3	D	674	703	Right-handed alpha
Helix 76	AI4	D	720	729	Right-handed alpha
Helix 77	AI5	D	733	741	Right-handed alpha
Helix 78	AI6	D	768	804	Right-handed alpha
Helix 79	AI7	D	805	807	Right-handed 310
Helix 80	AI8	D	834	840	Right-handed alpha
Helix 81	AI9	D	867	874	Right-handed alpha
Helix 82	AJ1	D	895	900	Right-handed alpha
Helix 83	AJ2	D	914	919	Right-handed alpha
Helix 84	AJ3	D	931	936	Right-handed 310
Helix 85	AJ4	D	1139	1147	Right-handed alpha
Helix 86	AJ5	D	1216	1223	Right-handed alpha
Helix 87	AJ6	D	1225	1245	Right-handed alpha
Helix 88	AJ7	D	1249	1261	Right-handed alpha
Helix 89	AJ8	D	1279	1293	Right-handed alpha
Helix 90	AJ9	D	1327	1339	Right-handed alpha
Helix 91	AK1	D	1346	1354	Right-handed alpha
Helix 92	AK2	D	1362	1371	Right-handed alpha
Helix 93	AK3	D	1372	1375	Right-handed 310
Helix 94	AK4	E	6	13	Right-handed alpha
Helix 95	AK5	E	18	33	Right-handed alpha
Helix 96	AK6	E	45	56	Right-handed alpha
Helix 97	AK7	E	60	75	Right-handed alpha
Helix 98	AK8	M	17	22	Right-handed alpha
Helix 99	AK9	M	29	40	Right-handed alpha
Helix 100	AL1	M	121	130	Right-handed alpha
Helix 101	AL2	M	135	146	Right-handed alpha
Helix 102	AL3	M	158	166	Right-handed alpha
Helix 103	AL4	M	175	184	Right-handed alpha
Helix 104	AL5	M	196	205	Right-handed alpha
Helix 105	AL6	M	212	223	Right-handed alpha
Helix 106	AL7	M	234	239	Right-handed alpha
Helix 107	AL8	M	242	245	Right-handed 310
Helix 108	AL9	M	246	254	Right-handed alpha
Helix 109	AM1	M	303	304	Right-handed 310
Helix 110	AM2	M	306	309	Right-handed 310
Helix 111	AM3	M	318	355	Right-handed alpha
Helix 112	AM4	M	368	375	Right-handed alpha
Helix 113	AM5	M	377	386	Right-handed alpha
Helix 114	AM6	M	418	428	Right-handed alpha
Helix 115	AM7	M	438	449	Right-handed alpha
Helix 116	AM8	M	457	462	Right-handed alpha

There are 41 sheets in PDB entry 5NSR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	198	204	anti-parallel
Strand 3	A	184	190	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	148	149	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	139	145	anti-parallel
Strand 3	A	58	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	25	31	anti-parallel
Strand 3	B	199	206	anti-parallel
Strand 4	B	182	189	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	61	first strand
Strand 2	B	140	147	anti-parallel
Strand 3	B	97	104	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	129	131	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	127	128	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	512	513	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	285	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	335	336	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	634	637	anti-parallel
Strand 3	C	642	645	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	701	first strand
Strand 2	C	1182	1183	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	724	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	749	752	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1073	1074	first strand
Strand 2	C	1066	1068	anti-parallel
Strand 3	C	1225	1234	anti-parallel
Strand 4	C	799	804	anti-parallel
Strand 5	C	1096	1098	parallel
Strand 6	C	816	819	anti-parallel
Strand 7	C	1076	1080	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1073	1074	first strand
Strand 2	C	1066	1068	anti-parallel
Strand 3	C	1225	1234	anti-parallel
Strand 4	C	1209	1210	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	838	first strand
Strand 2	C	1050	1058	anti-parallel
Strand 3	C	926	931	anti-parallel
Strand 4	C	876	877	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	887	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1337	first strand
Strand 2	D	22	24	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	242	243	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	177	179	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	421	424	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	353	357	anti-parallel
Strand 5	D	447	449	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	556	first strand
Strand 2	D	564	569	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	883	anti-parallel
Strand 3	D	843	844	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	960	961	first strand
Strand 2	D	981	982	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	966	967	first strand
Strand 2	D	973	974	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1060	first strand
Strand 2	D	1106	1107	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1165	1166	first strand
Strand 2	D	1176	1177	anti-parallel
Strand 3	D	1188	1189	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	279	280	first strand
Strand 2	M	287	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NSR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NSR