Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O5J entry

There are 24 chains in PDB entry 5O5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 7	C 1517
B	GLY 2	LYS 33
C	GLY 2	GLY 209
D	ALA 2	LYS 201
E	ASN 35	ALA 214
F	MET 1	HIS 96
G	PRO 2	TRP 156
H	THR 2	TRP 132
I	PRO 25	ARG 150
J	GLY 3	GLN 101
K	LYS 23	ARG 137
L	PRO 2	LYS 123
M	ALA 2	ILE 117
N	ALA 2	TRP 61
O	ALA 2	ARG 89
P	ALA 2	GLU 114
Q	GLN 4	ALA 97
R	THR 17	SER 81
S	PRO 2	HIS 83
T	ALA 2	LEU 86
V	MET 1	ARG 228
W	A 26	G 44
X	U 1	U 6
g	GLY 56	GLY 66

There are 88 helices in PDB entry 5O5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	24	Right-handed alpha
Helix 2	AA2	B	24	33	Right-handed alpha
Helix 3	AA3	C	6	11	Right-handed alpha
Helix 4	AA4	C	27	46	Right-handed alpha
Helix 5	AA5	C	71	75	Right-handed 310
Helix 6	AA6	C	80	93	Right-handed alpha
Helix 7	AA7	C	111	125	Right-handed alpha
Helix 8	AA8	C	128	143	Right-handed alpha
Helix 9	AA9	D	7	16	Right-handed alpha
Helix 10	AB1	D	23	29	Right-handed alpha
Helix 11	AB2	D	44	61	Right-handed alpha
Helix 12	AB3	D	63	77	Right-handed alpha
Helix 13	AB4	D	80	91	Right-handed alpha
Helix 14	AB5	D	92	100	Right-handed alpha
Helix 15	AB6	D	105	115	Right-handed alpha
Helix 16	AB7	D	141	146	Right-handed alpha
Helix 17	AB8	D	147	156	Right-handed alpha
Helix 18	AB9	D	182	187	Right-handed alpha
Helix 19	AC1	D	192	201	Right-handed alpha
Helix 20	AC2	E	80	95	Right-handed alpha
Helix 21	AC3	E	133	143	Right-handed alpha
Helix 22	AC4	E	157	172	Right-handed alpha
Helix 23	AC5	E	174	183	Right-handed alpha
Helix 24	AC6	E	185	190	Right-handed alpha
Helix 25	AC7	E	191	214	Right-handed alpha
Helix 26	AC8	F	15	17	Right-handed 310
Helix 27	AC9	F	18	34	Right-handed alpha
Helix 28	AD1	F	68	80	Right-handed alpha
Helix 29	AD2	G	20	31	Right-handed alpha
Helix 30	AD3	G	35	55	Right-handed alpha
Helix 31	AD4	G	57	69	Right-handed alpha
Helix 32	AD5	G	92	109	Right-handed alpha
Helix 33	AD6	G	115	129	Right-handed alpha
Helix 34	AD7	G	132	148	Right-handed alpha
Helix 35	AD8	G	149	155	Right-handed 310
Helix 36	AD9	H	5	20	Right-handed alpha
Helix 37	AE1	H	30	43	Right-handed alpha
Helix 38	AE2	H	115	121	Right-handed alpha
Helix 39	AE3	I	61	76	Right-handed alpha
Helix 40	AE4	I	91	111	Right-handed alpha
Helix 41	AE5	I	114	119	Right-handed alpha
Helix 42	AE6	J	14	32	Right-handed alpha
Helix 43	AE7	J	80	88	Right-handed alpha
Helix 44	AE8	K	62	67	Right-handed 310
Helix 45	AE9	K	68	85	Right-handed alpha
Helix 46	AF1	K	101	112	Right-handed alpha
Helix 47	AF2	L	3	11	Right-handed alpha
Helix 48	AF3	L	21	25	Right-handed 310
Helix 49	AF4	M	14	19	Right-handed alpha
Helix 50	AF5	M	20	22	Right-handed 310
Helix 51	AF6	M	26	38	Right-handed alpha
Helix 52	AF7	M	49	64	Right-handed alpha
Helix 53	AF8	M	66	84	Right-handed alpha
Helix 54	AF9	M	86	95	Right-handed alpha
Helix 55	AG1	M	107	112	Right-handed alpha
Helix 56	AG2	N	3	11	Right-handed alpha
Helix 57	AG3	N	16	20	Right-handed 310
Helix 58	AG4	N	40	51	Right-handed alpha
Helix 59	AG5	O	4	16	Right-handed alpha
Helix 60	AG6	O	24	46	Right-handed alpha
Helix 61	AG7	O	49	74	Right-handed alpha
Helix 62	AG8	O	74	86	Right-handed alpha
Helix 63	AG9	P	52	62	Right-handed alpha
Helix 64	AH1	P	67	78	Right-handed alpha
Helix 65	AH2	P	78	85	Right-handed alpha
Helix 66	AH3	P	101	114	Right-handed alpha
Helix 67	AH4	R	34	41	Right-handed alpha
Helix 68	AH5	R	50	55	Right-handed alpha
Helix 69	AH6	R	57	74	Right-handed alpha
Helix 70	AH7	S	4	8	Right-handed 310
Helix 71	AH8	S	12	25	Right-handed alpha
Helix 72	AH9	S	41	45	Right-handed 310
Helix 73	AI1	S	70	75	Right-handed 310
Helix 74	AI2	T	4	42	Right-handed alpha
Helix 75	AI3	T	43	63	Right-handed alpha
Helix 76	AI4	T	68	86	Right-handed alpha
Helix 77	AI5	V	5	12	Right-handed alpha
Helix 78	AI6	V	24	28	Right-handed 310
Helix 79	AI7	V	42	63	Right-handed alpha
Helix 80	AI8	V	73	88	Right-handed alpha
Helix 81	AI9	V	103	108	Right-handed alpha
Helix 82	AJ1	V	108	123	Right-handed alpha
Helix 83	AJ2	V	130	148	Right-handed alpha
Helix 84	AJ3	V	149	155	Right-handed alpha
Helix 85	AJ4	V	169	179	Right-handed alpha
Helix 86	AJ5	V	192	196	Right-handed 310
Helix 87	AJ6	V	206	227	Right-handed alpha
Helix 88	AJ7	g	57	65	Right-handed alpha

There are 20 sheets in PDB entry 5O5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	104	first strand
Strand 2	C	62	69	parallel
Strand 3	C	51	59	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	170	first strand
Strand 2	C	146	155	anti-parallel
Strand 3	C	195	204	anti-parallel
Strand 4	C	182	190	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	136	140	anti-parallel
Strand 3	D	175	177	anti-parallel
Strand 4	D	166	168	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	78	first strand
Strand 2	E	53	65	anti-parallel
Strand 3	E	37	50	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	114	first strand
Strand 2	E	117	123	anti-parallel
Strand 3	E	148	154	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	43	first strand
Strand 2	F	58	67	anti-parallel
Strand 3	F	2	11	anti-parallel
Strand 4	F	85	92	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	80	first strand
Strand 2	G	83	90	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	28	first strand
Strand 2	H	58	64	anti-parallel
Strand 3	H	46	53	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	H	126	132	anti-parallel
Strand 3	H	103	108	anti-parallel
Strand 4	H	111	114	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	31	first strand
Strand 2	I	35	42	anti-parallel
Strand 3	I	82	89	anti-parallel
Strand 4	I	48	50	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	77	first strand
Strand 2	J	5	12	anti-parallel
Strand 3	J	96	101	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	52	first strand
Strand 2	J	62	69	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	55	first strand
Strand 2	K	38	45	anti-parallel
Strand 3	K	27	35	anti-parallel
Strand 4	K	90	96	parallel
Strand 5	K	115	121	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	33	first strand
Strand 2	L	79	84	anti-parallel
Strand 3	L	95	97	anti-parallel
Strand 4	L	62	67	parallel
Strand 5	L	49	57	anti-parallel
Strand 6	L	32	41	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	10	first strand
Strand 2	P	17	24	anti-parallel
Strand 3	P	35	40	anti-parallel
Strand 4	P	49	51	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	22	26	first strand
Strand 2	Q	73	78	anti-parallel
Strand 3	Q	86	90	anti-parallel
Strand 4	Q	52	62	parallel
Strand 5	Q	35	45	anti-parallel
Strand 6	Q	26	29	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	73	75	first strand
Strand 2	Q	92	95	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	30	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	67	70	first strand
Strand 2	V	160	164	parallel
Strand 3	V	182	187	parallel
Strand 4	V	198	201	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	31	34	first strand
Strand 2	V	39	41	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5J