Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9G entry

There are 11 chains in PDB entry 5O9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 38ARG 134
B
LYS 16GLY 102
C
THR 16LYS 118
D
LYS 28LYS 122
E
HIS 39ALA 135
F
ASN 25GLY 102
G
ALA 14LYS 118
H
THR 29ALA 121
I
A -72 A 89
J
T -89 T 72
W
ASP 175GLY 1266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 5O9G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
44 56Right-handed alpha
Helix 2
AA2
A
63 79Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 132Right-handed alpha
Helix 5
AA5
B
24 29Right-handed 310
Helix 6
AA6
B
30 42Right-handed alpha
Helix 7
AA7
B
50 76Right-handed alpha
Helix 8
AA8
B
83 93Right-handed alpha
Helix 9
AA9
C
17 22Right-handed alpha
Helix 10
AB1
C
27 37Right-handed alpha
Helix 11
AB2
C
46 73Right-handed alpha
Helix 12
AB3
C
79 88Right-handed alpha
Helix 13
AB4
C
91 97Right-handed alpha
Helix 14
AB5
C
112 116Right-handed 310
Helix 15
AB6
D
37 44Right-handed alpha
Helix 16
AB7
D
52 81Right-handed alpha
Helix 17
AB8
D
87 99Right-handed alpha
Helix 18
AB9
D
101 121Right-handed alpha
Helix 19
AC1
E
44 55Right-handed alpha
Helix 20
AC2
E
63 79Right-handed alpha
Helix 21
AC3
E
85 114Right-handed alpha
Helix 22
AC4
E
120 132Right-handed alpha
Helix 23
AC5
F
25 29Right-handed 310
Helix 24
AC6
F
30 42Right-handed alpha
Helix 25
AC7
F
50 76Right-handed alpha
Helix 26
AC8
F
83 94Right-handed alpha
Helix 27
AC9
G
16 22Right-handed alpha
Helix 28
AD1
G
26 37Right-handed alpha
Helix 29
AD2
G
46 72Right-handed alpha
Helix 30
AD3
G
79 89Right-handed alpha
Helix 31
AD4
G
90 97Right-handed alpha
Helix 32
AD5
G
112 116Right-handed 310
Helix 33
AD6
H
35 43Right-handed alpha
Helix 34
AD7
H
52 81Right-handed alpha
Helix 35
AD8
H
87 99Right-handed alpha
Helix 36
AD9
H
101 121Right-handed alpha
Helix 37
AE1
W
203 210Right-handed alpha
Helix 38
AE2
W
221 225Right-handed 310
Helix 39
AE3
W
239 257Right-handed alpha
Helix 40
AE4
W
264 282Right-handed alpha
Helix 41
AE5
W
283 285Right-handed 310
Helix 42
AE6
W
331 344Right-handed alpha
Helix 43
AE7
W
347 351Right-handed 310
Helix 44
AE8
W
378 392Right-handed alpha
Helix 45
AE9
W
406 422Right-handed alpha
Helix 46
AF1
W
436 448Right-handed alpha
Helix 47
AF2
W
460 471Right-handed alpha
Helix 48
AF3
W
491 498Right-handed alpha
Helix 49
AF4
W
499 504Right-handed alpha
Helix 50
AF5
W
515 520Right-handed 310
Helix 51
AF6
W
523 530Right-handed alpha
Helix 52
AF7
W
548 560Right-handed alpha
Helix 53
AF8
W
578 591Right-handed alpha
Helix 54
AF9
W
598 606Right-handed 310
Helix 55
AG1
W
619 628Right-handed alpha
Helix 56
AG2
W
652 658Right-handed alpha
Helix 57
AG3
W
668 673Right-handed alpha
Helix 58
AG4
W
683 692Right-handed alpha
Helix 59
AG5
W
694 709Right-handed alpha
Helix 60
AG6
W
720 731Right-handed alpha
Helix 61
AG7
W
746 758Right-handed alpha
Helix 62
AG8
W
796 803Right-handed alpha
Helix 63
AG9
W
825 836Right-handed alpha
Helix 64
AH1
W
1011 1026Right-handed alpha
Helix 65
AH2
W
1031 1037Right-handed alpha
Helix 66
AH3
W
1045 1090Right-handed alpha
Helix 67
AH4
W
1103 1113Right-handed alpha
Helix 68
AH5
W
1130 1149Right-handed alpha
Helix 69
AH6
W
1154 1158Right-handed 310
Helix 70
AH7
W
1176 1190Right-handed alpha
Helix 71
AH8
W
1194 1199Right-handed alpha
Helix 72
AH9
W
1206 1210Right-handed 310
Helix 73
AI1
W
1249 1266Right-handed alpha
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There are 8 sheets in PDB entry 5O9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 97first strand
Strand 2
G
100 101parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
50 51parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 101first strand
Strand 2
F
96 97parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
50 51parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
179 187first strand
Strand 2
W
211 217anti-parallel
Strand 3
W
226 228anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
287 297first strand
Strand 2
W
303 311anti-parallel
Strand 3
W
321 323anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
487 490first strand
Strand 2
W
428 431parallel
Strand 3
W
509 513parallel
Strand 4
W
536 540parallel
Strand 5
W
397 399parallel
Strand 6
W
594 595parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
612 616first strand
Strand 2
W
815 821parallel
Strand 3
W
785 788parallel
Strand 4
W
714 717parallel
Strand 5
W
766 768parallel
Strand 6
W
738 739parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il