Analysis of interatomic Contacts of Structural Units in PDB entry:
5O9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O9S entry

There are 4 chains in PDB entry 5O9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 115GLN 496
B
 ARG 115GLN 496
C
 GLY 2LYS 9
D
 GLY 2LYS 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5O9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 123Right-handed 310
Helix 2
AA2
A
165 180Right-handed alpha
Helix 3
AA3
A
193 202Right-handed alpha
Helix 4
AA4
A
207 209Right-handed 310
Helix 5
AA5
A
254 257Right-handed 310
Helix 6
AA6
A
258 273Right-handed alpha
Helix 7
AA7
A
302 309Right-handed alpha
Helix 8
AA8
A
319 327Right-handed alpha
Helix 9
AA9
A
342 344Right-handed 310
Helix 10
AB1
A
345 358Right-handed alpha
Helix 11
AB2
A
367 376Right-handed alpha
Helix 12
AB3
A
430 446Right-handed alpha
Helix 13
AB4
A
457 461Right-handed 310
Helix 14
AB5
A
487 491Right-handed 310
Helix 15
AB6
B
165 180Right-handed alpha
Helix 16
AB7
B
193 202Right-handed alpha
Helix 17
AB8
B
207 209Right-handed 310
Helix 18
AB9
B
258 273Right-handed alpha
Helix 19
AC1
B
302 309Right-handed alpha
Helix 20
AC2
B
319 327Right-handed alpha
Helix 21
AC3
B
342 344Right-handed 310
Helix 22
AC4
B
345 358Right-handed alpha
Helix 23
AC5
B
367 376Right-handed alpha
Helix 24
AC6
B
430 445Right-handed alpha
Helix 25
AC7
B
457 461Right-handed 310
Helix 26
AC8
B
487 491Right-handed 310
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There are 6 sheets in PDB entry 5O9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
222 235anti-parallel
Strand 4
A
238 250anti-parallel
Strand 5
A
278 283parallel
Strand 6
A
468 479anti-parallel
Strand 7
A
292 300anti-parallel
Strand 8
A
449 453anti-parallel
Strand 9
A
418 421parallel
Strand 10
A
394 402anti-parallel
Strand 11
A
362 364first strand
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
394 402anti-parallel
Strand 4
A
418 421anti-parallel
Strand 5
A
449 453parallel
Strand 6
A
292 300anti-parallel
Strand 7
A
468 479anti-parallel
Strand 8
A
278 283anti-parallel
Strand 9
A
238 250parallel
Strand 10
A
222 235anti-parallel
Strand 11
A
425 426first strand
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
405 407anti-parallel
Strand 3
A
415 416anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
222 235anti-parallel
Strand 4
B
238 250anti-parallel
Strand 5
B
279 283parallel
Strand 6
B
468 479anti-parallel
Strand 7
B
292 300anti-parallel
Strand 8
B
449 453anti-parallel
Strand 9
B
418 421parallel
Strand 10
B
394 402anti-parallel
Strand 11
B
382 388anti-parallel
Strand 12
B
338 340anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
222 235anti-parallel
Strand 4
B
362 364anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
405 407anti-parallel
Strand 3
B
415 416anti-parallel
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