Analysis of interatomic Contacts of Structural Units in PDB entry:
5OAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OAQ entry

There are 2 chains in PDB entry 5OAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 217GLU 434
L
ASP 60PRO 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5OAQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
268 274Right-handed 310
Helix 2
AA2
A
280 288Right-handed alpha
Helix 3
AA3
A
289 291Right-handed 310
Helix 4
AA4
A
367 379Right-handed alpha
Helix 5
AA5
A
382 391Right-handed alpha
Helix 6
AA6
L
64 74Right-handed alpha
Helix 7
AA7
L
75 78Right-handed 310
Helix 8
AA8
L
85 89Right-handed 310
Helix 9
AA9
L
92 97Right-handed 310
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There are 2 sheets in PDB entry 5OAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
241 250first strand
Strand 2
A
225 238anti-parallel
Strand 3
A
312 322anti-parallel
Strand 4
A
356 365anti-parallel
Strand 5
A
351 353anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
264 266first strand
Strand 2
A
425 432parallel
Strand 3
A
293 300anti-parallel
Strand 4
A
407 417parallel
Strand 5
A
393 401anti-parallel
Strand 6
A
328 336anti-parallel
Strand 7
A
339 348anti-parallel
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