Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5OB1 entry
There are 2 chains in PDB entry 5OB1
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
THR 85 | ASP 141 |
B
|
ALA 1 | LEU 12 |
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There are no helices in PDB entry
5OB1
There is
1 sheet (AA1) in PDB entry 5OB1.
There are 5
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 129 |
133 | first strand |
Strand 2 |
A
| 118 |
123 | anti-parallel |
Strand 3 |
A
| 107 |
112 | anti-parallel |
Strand 4 |
A
| 86 |
88 | anti-parallel |
Strand 5 |
A
| 137 |
139 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il