Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ODS entry

There are 3 chains in PDB entry 5ODS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 3ARG 574
B
GLN 3ASN 572
C
GLN 3LEU 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5ODS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
16 19Right-handed 310
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
145 149Right-handed 310
Helix 4
AA4
A
333 341Right-handed alpha
Helix 5
AA5
A
344 355Right-handed alpha
Helix 6
AA6
A
360 374Right-handed alpha
Helix 7
AA7
A
376 386Right-handed alpha
Helix 8
AA8
A
394 403Right-handed alpha
Helix 9
AA9
A
412 425Right-handed alpha
Helix 10
AB1
A
428 442Right-handed alpha
Helix 11
AB2
A
445 454Right-handed alpha
Helix 12
AB3
A
460 469Right-handed alpha
Helix 13
AB4
A
471 482Right-handed alpha
Helix 14
AB5
A
484 495Right-handed alpha
Helix 15
AB6
A
497 509Right-handed alpha
Helix 16
AB7
A
513 525Right-handed alpha
Helix 17
AB8
A
525 537Right-handed alpha
Helix 18
AB9
A
545 556Right-handed alpha
Helix 19
AC1
A
558 574Right-handed alpha
Helix 20
AC2
B
16 19Right-handed 310
Helix 21
AC3
B
21 25Right-handed 310
Helix 22
AC4
B
145 149Right-handed 310
Helix 23
AC5
B
333 341Right-handed alpha
Helix 24
AC6
B
344 355Right-handed alpha
Helix 25
AC7
B
360 374Right-handed alpha
Helix 26
AC8
B
376 386Right-handed alpha
Helix 27
AC9
B
394 403Right-handed alpha
Helix 28
AD1
B
412 423Right-handed alpha
Helix 29
AD2
B
428 437Right-handed alpha
Helix 30
AD3
B
438 442Right-handed 310
Helix 31
AD4
B
444 455Right-handed alpha
Helix 32
AD5
B
460 469Right-handed alpha
Helix 33
AD6
B
471 482Right-handed alpha
Helix 34
AD7
B
485 496Right-handed alpha
Helix 35
AD8
B
498 508Right-handed alpha
Helix 36
AD9
B
514 525Right-handed alpha
Helix 37
AE1
B
525 537Right-handed alpha
Helix 38
AE2
B
545 556Right-handed alpha
Helix 39
AE3
B
558 572Right-handed alpha
Helix 40
AE4
C
16 19Right-handed 310
Helix 41
AE5
C
21 25Right-handed 310
Helix 42
AE6
C
145 149Right-handed 310
Helix 43
AE7
C
333 341Right-handed alpha
Helix 44
AE8
C
344 355Right-handed alpha
Helix 45
AE9
C
360 374Right-handed alpha
Helix 46
AF1
C
376 386Right-handed alpha
Helix 47
AF2
C
394 403Right-handed alpha
Helix 48
AF3
C
413 425Right-handed alpha
Helix 49
AF4
C
428 442Right-handed alpha
Helix 50
AF5
C
447 454Right-handed alpha
Helix 51
AF6
C
461 469Right-handed alpha
Helix 52
AF7
C
471 482Right-handed alpha
Helix 53
AF8
C
484 494Right-handed alpha
Helix 54
AF9
C
498 508Right-handed alpha
Helix 55
AG1
C
513 525Right-handed alpha
Helix 56
AG2
C
525 537Right-handed alpha
Helix 57
AG3
C
545 556Right-handed alpha
Helix 58
AG4
C
558 571Right-handed alpha
Helix 59
AG5
D
16 19Right-handed 310
Helix 60
AG6
D
21 25Right-handed 310
Helix 61
AG7
D
145 149Right-handed 310
Helix 62
AG8
D
333 341Right-handed alpha
Helix 63
AG9
D
344 355Right-handed alpha
Helix 64
AH1
D
359 374Right-handed alpha
Helix 65
AH2
D
377 386Right-handed alpha
Helix 66
AH3
D
394 403Right-handed alpha
Helix 67
AH4
D
412 425Right-handed alpha
Helix 68
AH5
D
428 442Right-handed alpha
Helix 69
AH6
D
445 454Right-handed alpha
Helix 70
AH7
D
460 469Right-handed alpha
Helix 71
AH8
D
471 482Right-handed alpha
Helix 72
AH9
D
485 494Right-handed alpha
Helix 73
AI1
D
498 509Right-handed alpha
Helix 74
AI2
D
513 525Right-handed alpha
Helix 75
AI3
D
525 538Right-handed alpha
Helix 76
AI4
D
545 556Right-handed alpha
Helix 77
AI5
D
558 572Right-handed alpha
Helix 78
AI6
E
551 564Right-handed alpha
Helix 79
AI7
F
551 564Right-handed alpha
Helix 80
AI8
G
551 564Right-handed alpha
Helix 81
AI9
H
551 564Right-handed alpha
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There are 28 sheets in PDB entry 5ODS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
7 14first strand
Strand 2
A
323 329anti-parallel
Strand 3
A
314 318anti-parallel
Strand 4
A
305 309anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 31first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
62 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 73first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
97 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 115first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
139 143anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 158first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
177 185anti-parallel
Strand 4
A
190 194anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
198 204first strand
Strand 2
A
213 222anti-parallel
Strand 3
A
225 232anti-parallel
Strand 4
A
246 249anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
261 267first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
281 286anti-parallel
Strand 4
A
292 297anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 14first strand
Strand 2
B
323 329anti-parallel
Strand 3
B
314 318anti-parallel
Strand 4
B
305 309anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 31first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
47 54anti-parallel
Strand 4
B
62 64anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
70 73first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
97 103anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 115first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
126 131anti-parallel
Strand 4
B
139 143anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
152 158first strand
Strand 2
B
164 172anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
190 195anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
198 204first strand
Strand 2
B
213 222anti-parallel
Strand 3
B
225 232anti-parallel
Strand 4
B
246 249anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
261 267first strand
Strand 2
B
272 277anti-parallel
Strand 3
B
281 286anti-parallel
Strand 4
B
292 297anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
7 14first strand
Strand 2
C
323 329anti-parallel
Strand 3
C
314 318anti-parallel
Strand 4
C
305 309anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 31first strand
Strand 2
C
37 40anti-parallel
Strand 3
C
50 54anti-parallel
Strand 4
C
62 64anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
70 73first strand
Strand 2
C
79 84anti-parallel
Strand 3
C
87 92anti-parallel
Strand 4
C
97 103anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
108 115first strand
Strand 2
C
118 123anti-parallel
Strand 3
C
126 131anti-parallel
Strand 4
C
139 143anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
152 158first strand
Strand 2
C
164 172anti-parallel
Strand 3
C
177 185anti-parallel
Strand 4
C
191 195anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
198 204first strand
Strand 2
C
213 222anti-parallel
Strand 3
C
225 232anti-parallel
Strand 4
C
246 249anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
261 267first strand
Strand 2
C
272 277anti-parallel
Strand 3
C
282 286anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
7 14first strand
Strand 2
D
323 329anti-parallel
Strand 3
D
314 318anti-parallel
Strand 4
D
305 309anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 31first strand
Strand 2
D
37 44anti-parallel
Strand 3
D
47 54anti-parallel
Strand 4
D
62 64anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
70 73first strand
Strand 2
D
79 84anti-parallel
Strand 3
D
87 92anti-parallel
Strand 4
D
97 102anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
108 115first strand
Strand 2
D
118 123anti-parallel
Strand 3
D
126 131anti-parallel
Strand 4
D
139 143anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
152 158first strand
Strand 2
D
164 172anti-parallel
Strand 3
D
177 185anti-parallel
Strand 4
D
190 194anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
198 204first strand
Strand 2
D
213 222anti-parallel
Strand 3
D
225 232anti-parallel
Strand 4
D
246 249anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
261 267first strand
Strand 2
D
272 277anti-parallel
Strand 3
D
282 286anti-parallel
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