Analysis of interatomic Contacts of Structural Units in PDB entry:
5OF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OF4 entry

There are 10 chains in PDB entry 5OF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
UNK 221VAL 728
B
TYR 11LEU 734
D
UNK 378GLN 458
E
MET 57PRO 240
F
ASP 6ILE 242
G
VAL 2SER 67
H
UNK 45UNK 168
Z
UNK 1UNK 584
Y
UNK 19UNK 699
X
UNK 80UNK 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 5OF4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
242 256Right-handed alpha
Helix 2
AA2
A
277 288Right-handed alpha
Helix 3
AA3
A
317 329Right-handed alpha
Helix 4
AA4
A
348 358Right-handed alpha
Helix 5
AA5
A
367 380Right-handed alpha
Helix 6
AA6
A
420 434Right-handed alpha
Helix 7
AA7
A
447 458Right-handed alpha
Helix 8
AA8
A
480 485Right-handed alpha
Helix 9
AA9
A
492 498Right-handed alpha
Helix 10
AB1
A
515 525Right-handed alpha
Helix 11
AB2
A
528 536Right-handed alpha
Helix 12
AB3
A
537 554Right-handed alpha
Helix 13
AB4
A
565 575Right-handed alpha
Helix 14
AB5
A
585 598Right-handed alpha
Helix 15
AB6
A
632 644Right-handed alpha
Helix 16
AB7
A
667 684Right-handed alpha
Helix 17
AB8
A
695 699Right-handed 310
Helix 18
AB9
A
705 719Right-handed alpha
Helix 19
AC1
A
720 724Right-handed 310
Helix 20
AC2
B
20 34Right-handed alpha
Helix 21
AC3
B
47 61Right-handed alpha
Helix 22
AC4
B
76 99Right-handed alpha
Helix 23
AC5
B
127 140Right-handed alpha
Helix 24
AC6
B
155 167Right-handed alpha
Helix 25
AC7
B
176 186Right-handed alpha
Helix 26
AC8
B
190 200Right-handed alpha
Helix 27
AC9
B
209 213Right-handed alpha
Helix 28
AD1
B
238 248Right-handed alpha
Helix 29
AD2
B
253 272Right-handed alpha
Helix 30
AD3
B
275 291Right-handed alpha
Helix 31
AD4
B
299 304Right-handed alpha
Helix 32
AD5
B
324 347Right-handed alpha
Helix 33
AD6
B
354 365Right-handed alpha
Helix 34
AD7
B
370 385Right-handed alpha
Helix 35
AD8
B
390 410Right-handed alpha
Helix 36
AD9
B
440 451Right-handed alpha
Helix 37
AE1
B
466 470Right-handed 310
Helix 38
AE2
B
514 531Right-handed alpha
Helix 39
AE3
B
541 555Right-handed alpha
Helix 40
AE4
B
558 565Right-handed alpha
Helix 41
AE5
B
574 589Right-handed alpha
Helix 42
AE6
B
604 609Right-handed alpha
Helix 43
AE7
B
630 642Right-handed alpha
Helix 44
AE8
B
646 665Right-handed alpha
Helix 45
AE9
B
693 700Right-handed alpha
Helix 46
AF1
B
709 726Right-handed alpha
Helix 47
AF2
D
386 397Right-handed alpha
Helix 48
AF3
D
415 428Right-handed alpha
Helix 49
AF4
D
447 458Right-handed alpha
Helix 50
AF5
E
68 73Right-handed 310
Helix 51
AF6
E
79 99Right-handed alpha
Helix 52
AF7
E
123 134Right-handed alpha
Helix 53
AF8
E
135 137Right-handed 310
Helix 54
AF9
E
144 158Right-handed alpha
Helix 55
AG1
E
182 193Right-handed alpha
Helix 56
AG2
E
205 215Right-handed alpha
Helix 57
AG3
E
224 237Right-handed alpha
Helix 58
AG4
F
18 25Right-handed alpha
Helix 59
AG5
F
33 52Right-handed alpha
Helix 60
AG6
F
100 121Right-handed alpha
Helix 61
AG7
F
130 151Right-handed alpha
Helix 62
AG8
F
170 172Right-handed 310
Helix 63
AG9
F
173 186Right-handed alpha
Helix 64
AH1
F
200 211Right-handed alpha
Helix 65
AH2
F
219 232Right-handed alpha
Helix 66
AH3
G
13 25Right-handed alpha
Helix 67
AH4
G
57 67Right-handed alpha
Helix 68
AH5
H
47 60Right-handed alpha
Helix 69
AH6
H
60 71Right-handed alpha
Helix 70
AH7
H
75 88Right-handed alpha
Helix 71
AH8
H
94 103Right-handed alpha
Helix 72
AH9
H
107 168Right-handed alpha
Helix 73
AI1
Z
103 118Right-handed alpha
Helix 74
AI2
Z
172 180Right-handed alpha
Helix 75
AI3
Z
209 223Right-handed alpha
Helix 76
AI4
Z
251 267Right-handed alpha
Helix 77
AI5
Z
282 293Right-handed alpha
Helix 78
AI6
Z
402 421Right-handed alpha
Helix 79
AI7
Z
431 454Right-handed alpha
Helix 80
AI8
Z
466 487Right-handed alpha
Helix 81
AI9
Z
502 519Right-handed alpha
Helix 82
AJ1
Z
533 538Right-handed alpha
Helix 83
AJ2
Z
552 559Right-handed alpha
Helix 84
AJ3
Z
572 583Right-handed alpha
Helix 85
AJ4
Y
37 49Right-handed alpha
Helix 86
AJ5
Y
62 74Right-handed alpha
Helix 87
AJ6
Y
105 105Right-handed alpha
Helix 88
AJ7
Y
108 117Right-handed alpha
Helix 89
AJ8
Y
122 130Right-handed alpha
Helix 90
AJ9
Y
132 146Right-handed alpha
Helix 91
AK1
Y
237 249Right-handed alpha
Helix 92
AK2
Y
262 271Right-handed alpha
Helix 93
AK3
Y
304 320Right-handed alpha
Helix 94
AK4
Y
374 383Right-handed alpha
Helix 95
AK5
Y
500 511Right-handed alpha
Helix 96
AK6
Y
602 612Right-handed alpha
Helix 97
AK7
Y
645 649Right-handed 310
Helix 98
AK8
Y
663 670Right-handed alpha
Helix 99
AK9
Y
688 698Right-handed alpha
Helix 100
AL1
X
81 92Right-handed alpha
Helix 101
AL2
X
135 144Right-handed alpha
Helix 102
AL3
X
150 157Right-handed alpha
Helix 103
AL4
X
738 750Right-handed alpha
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There are 12 sheets in PDB entry 5OF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
224 226first strand
Strand 2
A
292 294parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
236 237first strand
Strand 2
A
269 270anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
336 338first strand
Strand 2
A
464 466parallel
Strand 3
A
438 441parallel
Strand 4
A
361 365parallel
Strand 5
A
405 409parallel
Strand 6
A
389 391parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
505 512first strand
Strand 2
A
657 664parallel
Strand 3
A
622 625parallel
Strand 4
A
559 561parallel
Strand 5
A
605 607parallel
Strand 6
A
579 580parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
204 208first strand
Strand 2
B
70 74parallel
Strand 3
B
230 233parallel
Strand 4
B
453 456parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
249 252first strand
Strand 2
B
432 436anti-parallel
Strand 3
B
415 418anti-parallel
Strand 4
B
351 352anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
492 494first strand
Strand 2
B
676 680parallel
Strand 3
B
617 621parallel
Strand 4
B
536 539parallel
Strand 5
B
596 599parallel
Strand 6
B
568 569parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
402 405first strand
Strand 2
G
8 11anti-parallel
Strand 3
G
42 45anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
407 409first strand
Strand 2
D
441 443anti-parallel
Strand 3
D
431 433anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
114 116first strand
Strand 2
E
103 109anti-parallel
Strand 3
E
60 66parallel
Strand 4
E
168 170parallel
Strand 5
E
197 199parallel
Strand 6
E
219 220parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
68 70first strand
Strand 2
F
56 61anti-parallel
Strand 3
F
9 15parallel
Strand 4
F
158 165parallel
Strand 5
F
191 195parallel
Strand 6
F
214 215parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
162 163first strand
Strand 2
X
169 171anti-parallel
Strand 3
X
176 178anti-parallel
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