Analysis of interatomic Contacts of Structural Units in PDB entry:
5OGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OGC entry

There are 3 chains in PDB entry 5OGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 HIS 10SER 357
A
 ARG 2SER 439
B
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5OGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
22 29Right-handed alpha
Helix 2
AA2
K
85 104Right-handed alpha
Helix 3
AA3
K
118 124Right-handed alpha
Helix 4
AA4
K
131 151Right-handed alpha
Helix 5
AA5
K
199 214Right-handed alpha
Helix 6
AA6
K
264 269Right-handed alpha
Helix 7
AA7
K
271 301Right-handed alpha
Helix 8
AA8
K
306 309Right-handed 310
Helix 9
AA9
K
310 321Right-handed alpha
Helix 10
AB1
K
337 355Right-handed alpha
Helix 11
AB2
A
10 28Right-handed alpha
Helix 12
AB3
A
71 81Right-handed alpha
Helix 13
AB4
A
102 108Right-handed alpha
Helix 14
AB5
A
110 129Right-handed alpha
Helix 15
AB6
A
147 161Right-handed alpha
Helix 16
AB7
A
182 196Right-handed alpha
Helix 17
AB8
A
205 216Right-handed alpha
Helix 18
AB9
A
223 239Right-handed alpha
Helix 19
AC1
A
251 260Right-handed alpha
Helix 20
AC2
A
287 292Right-handed alpha
Helix 21
AC3
A
292 297Right-handed alpha
Helix 22
AC4
A
298 301Right-handed 310
Helix 23
AC5
A
324 337Right-handed alpha
Helix 24
AC6
A
383 400Right-handed alpha
Helix 25
AC7
A
401 404Right-handed 310
Helix 26
AC8
A
405 410Right-handed alpha
Helix 27
AC9
A
414 435Right-handed alpha
Helix 28
AD1
B
10 27Right-handed alpha
Helix 29
AD2
B
48 51Right-handed 310
Helix 30
AD3
B
71 79Right-handed alpha
Helix 31
AD4
B
82 86Right-handed 310
Helix 32
AD5
B
88 90Right-handed 310
Helix 33
AD6
B
102 108Right-handed alpha
Helix 34
AD7
B
109 127Right-handed alpha
Helix 35
AD8
B
143 148Right-handed alpha
Helix 36
AD9
B
148 161Right-handed alpha
Helix 37
AE1
B
183 195Right-handed alpha
Helix 38
AE2
B
205 215Right-handed alpha
Helix 39
AE3
B
223 243Right-handed alpha
Helix 40
AE4
B
251 260Right-handed alpha
Helix 41
AE5
B
288 296Right-handed alpha
Helix 42
AE6
B
306 310Right-handed 310
Helix 43
AE7
B
326 339Right-handed alpha
Helix 44
AE8
B
340 343Right-handed 310
Helix 45
AE9
B
384 400Right-handed alpha
Helix 46
AF1
B
405 410Right-handed alpha
Helix 47
AF2
B
414 437Right-handed alpha
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There are 7 sheets in PDB entry 5OGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
78 80first strand
Strand 2
K
12 18parallel
Strand 3
K
326 332parallel
Strand 4
K
107 111parallel
Strand 5
K
250 258parallel
Strand 6
K
229 238anti-parallel
Strand 7
K
153 163anti-parallel
Strand 8
K
166 169anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
34 36first strand
Strand 2
K
41 44anti-parallel
Strand 3
K
72 75anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
179 181first strand
Strand 2
K
187 189anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 139parallel
Strand 5
A
165 170parallel
Strand 6
A
202 203parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 355parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 203parallel
Strand 7
B
267 271parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
62 63anti-parallel
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