Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OQP entry

There are 4 chains in PDB entry 5OQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8ASN 908
B
 SER 384LEU 522
C
 G 1 C 18
D
 G 1 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5OQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
30 48Right-handed alpha
Helix 3
AA3
A
50 63Right-handed alpha
Helix 4
AA4
A
76 100Right-handed alpha
Helix 5
AA5
A
106 123Right-handed alpha
Helix 6
AA6
A
124 126Right-handed 310
Helix 7
AA7
A
130 145Right-handed alpha
Helix 8
AA8
A
152 167Right-handed alpha
Helix 9
AA9
A
171 183Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
205 217Right-handed alpha
Helix 12
AB3
A
219 230Right-handed alpha
Helix 13
AB4
A
236 242Right-handed alpha
Helix 14
AB5
A
243 246Right-handed 310
Helix 15
AB6
A
248 258Right-handed alpha
Helix 16
AB7
A
258 264Right-handed alpha
Helix 17
AB8
A
265 271Right-handed alpha
Helix 18
AB9
A
272 286Right-handed alpha
Helix 19
AC1
A
288 301Right-handed alpha
Helix 20
AC2
A
301 307Right-handed alpha
Helix 21
AC3
A
310 318Right-handed alpha
Helix 22
AC4
A
322 337Right-handed alpha
Helix 23
AC5
A
337 344Right-handed alpha
Helix 24
AC6
A
355 372Right-handed alpha
Helix 25
AC7
A
374 381Right-handed alpha
Helix 26
AC8
A
384 401Right-handed alpha
Helix 27
AC9
A
412 431Right-handed alpha
Helix 28
AD1
A
436 452Right-handed alpha
Helix 29
AD2
A
457 473Right-handed alpha
Helix 30
AD3
A
474 496Right-handed alpha
Helix 31
AD4
A
571 587Right-handed alpha
Helix 32
AD5
A
592 595Right-handed 310
Helix 33
AD6
A
596 606Right-handed alpha
Helix 34
AD7
A
606 612Right-handed alpha
Helix 35
AD8
A
615 631Right-handed alpha
Helix 36
AD9
A
633 651Right-handed alpha
Helix 37
AE1
A
652 671Right-handed alpha
Helix 38
AE2
A
672 675Right-handed 310
Helix 39
AE3
A
682 696Right-handed alpha
Helix 40
AE4
A
699 716Right-handed alpha
Helix 41
AE5
A
721 734Right-handed alpha
Helix 42
AE6
A
735 739Right-handed 310
Helix 43
AE7
A
740 758Right-handed alpha
Helix 44
AE8
A
758 786Right-handed alpha
Helix 45
AE9
A
798 810Right-handed alpha
Helix 46
AF1
A
811 815Right-handed 310
Helix 47
AF2
A
826 839Right-handed alpha
Helix 48
AF3
A
840 842Right-handed 310
Helix 49
AF4
A
844 853Right-handed alpha
Helix 50
AF5
A
854 858Right-handed 310
Helix 51
AF6
A
865 882Right-handed alpha
Helix 52
AF7
A
886 906Right-handed alpha
Helix 53
AF8
B
385 396Right-handed alpha
Helix 54
AF9
B
398 402Right-handed 310
Helix 55
AG1
B
471 476Right-handed 310
Helix 56
AG2
B
505 511Right-handed alpha
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There are no sheets in PDB entry 5OQP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il