Analysis of interatomic Contacts of Structural Units in PDB entry:
5OSB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OSB entry

There are 5 chains in PDB entry 5OSB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	LEU 415
B	MET 3	LEU 415
C	MET 3	LEU 415
D	MET 3	LEU 415
E	MET 3	ASP 12

There are 40 helices in PDB entry 5OSB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	52	Right-handed 310
Helix 2	AA2	A	145	148	Right-handed 310
Helix 3	AA3	A	193	229	Right-handed alpha
Helix 4	AA4	A	229	243	Right-handed alpha
Helix 5	AA5	A	244	246	Right-handed 310
Helix 6	AA6	A	250	274	Right-handed alpha
Helix 7	AA7	A	283	309	Right-handed alpha
Helix 8	AA8	A	313	415	Right-handed alpha
Helix 9	AA9	B	49	52	Right-handed 310
Helix 10	AB1	B	145	148	Right-handed 310
Helix 11	AB2	B	193	229	Right-handed alpha
Helix 12	AB3	B	229	243	Right-handed alpha
Helix 13	AB4	B	244	246	Right-handed 310
Helix 14	AB5	B	250	274	Right-handed alpha
Helix 15	AB6	B	283	309	Right-handed alpha
Helix 16	AB7	B	313	415	Right-handed alpha
Helix 17	AB8	C	49	52	Right-handed 310
Helix 18	AB9	C	145	148	Right-handed 310
Helix 19	AC1	C	193	229	Right-handed alpha
Helix 20	AC2	C	229	243	Right-handed alpha
Helix 21	AC3	C	244	246	Right-handed 310
Helix 22	AC4	C	250	274	Right-handed alpha
Helix 23	AC5	C	283	309	Right-handed alpha
Helix 24	AC6	C	313	414	Right-handed alpha
Helix 25	AC7	D	49	52	Right-handed 310
Helix 26	AC8	D	145	148	Right-handed 310
Helix 27	AC9	D	193	229	Right-handed alpha
Helix 28	AD1	D	229	243	Right-handed alpha
Helix 29	AD2	D	244	246	Right-handed 310
Helix 30	AD3	D	250	274	Right-handed alpha
Helix 31	AD4	D	283	309	Right-handed alpha
Helix 32	AD5	D	313	415	Right-handed alpha
Helix 33	AD6	E	49	52	Right-handed 310
Helix 34	AD7	E	145	148	Right-handed 310
Helix 35	AD8	E	193	229	Right-handed alpha
Helix 36	AD9	E	229	243	Right-handed alpha
Helix 37	AE1	E	244	246	Right-handed 310
Helix 38	AE2	E	250	274	Right-handed alpha
Helix 39	AE3	E	283	309	Right-handed alpha
Helix 40	AE4	E	313	415	Right-handed alpha

There are 17 sheets in PDB entry 5OSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	93	first strand
Strand 2	A	98	110	anti-parallel
Strand 3	A	35	47	anti-parallel
Strand 4	A	15	30	anti-parallel
Strand 5	A	139	143	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	93	first strand
Strand 2	A	98	110	anti-parallel
Strand 3	A	35	47	anti-parallel
Strand 4	A	15	30	anti-parallel
Strand 5	A	149	150	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	122	132	anti-parallel
Strand 3	A	178	191	anti-parallel
Strand 4	A	159	175	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	93	first strand
Strand 2	B	98	110	anti-parallel
Strand 3	B	35	47	anti-parallel
Strand 4	B	15	30	anti-parallel
Strand 5	B	139	143	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	93	first strand
Strand 2	B	98	110	anti-parallel
Strand 3	B	35	47	anti-parallel
Strand 4	B	15	30	anti-parallel
Strand 5	B	149	150	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	122	132	anti-parallel
Strand 3	B	178	191	anti-parallel
Strand 4	B	159	175	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	93	first strand
Strand 2	C	98	110	anti-parallel
Strand 3	C	35	47	anti-parallel
Strand 4	C	15	30	anti-parallel
Strand 5	C	139	143	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	93	first strand
Strand 2	C	98	110	anti-parallel
Strand 3	C	35	47	anti-parallel
Strand 4	C	15	30	anti-parallel
Strand 5	C	149	150	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	122	132	anti-parallel
Strand 3	C	178	191	anti-parallel
Strand 4	C	159	166	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	122	132	anti-parallel
Strand 3	C	178	191	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	93	first strand
Strand 2	D	98	110	anti-parallel
Strand 3	D	35	47	anti-parallel
Strand 4	D	15	30	anti-parallel
Strand 5	D	139	143	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	93	first strand
Strand 2	D	98	110	anti-parallel
Strand 3	D	35	47	anti-parallel
Strand 4	D	15	30	anti-parallel
Strand 5	D	149	150	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	122	132	anti-parallel
Strand 3	D	178	191	anti-parallel
Strand 4	D	159	175	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	93	first strand
Strand 2	E	98	110	anti-parallel
Strand 3	E	35	47	anti-parallel
Strand 4	E	15	30	anti-parallel
Strand 5	E	139	143	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	93	first strand
Strand 2	E	98	110	anti-parallel
Strand 3	E	35	47	anti-parallel
Strand 4	E	15	30	anti-parallel
Strand 5	E	149	150	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	122	132	anti-parallel
Strand 3	E	178	191	anti-parallel
Strand 4	E	159	166	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	122	132	anti-parallel
Strand 3	E	178	191	anti-parallel
Strand 4	E	171	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OSB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OSB