Analysis of interatomic Contacts of Structural Units in PDB entry:
5QJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5QJX entry

There are 4 chains in PDB entry 5QJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	ALA 207
B	LYS 14	ASN 208
C	GLN 15	ALA 207
D	LYS 14	ASN 208

There are 17 helices in PDB entry 5QJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	88	Right-handed 310
Helix 2	AA2	A	104	118	Right-handed alpha
Helix 3	AA3	A	152	156	Right-handed 310
Helix 4	AA4	A	177	190	Right-handed alpha
Helix 5	AA5	A	194	207	Right-handed alpha
Helix 6	AA6	B	104	118	Right-handed alpha
Helix 7	AA7	B	152	156	Right-handed 310
Helix 8	AA8	B	177	190	Right-handed alpha
Helix 9	AA9	B	194	207	Right-handed alpha
Helix 10	AB1	C	104	118	Right-handed alpha
Helix 11	AB2	C	152	156	Right-handed 310
Helix 12	AB3	C	177	189	Right-handed alpha
Helix 13	AB4	C	195	207	Right-handed alpha
Helix 14	AB5	D	104	118	Right-handed alpha
Helix 15	AB6	D	152	156	Right-handed 310
Helix 16	AB7	D	177	189	Right-handed alpha
Helix 17	AB8	D	194	207	Right-handed alpha

There are 14 sheets in PDB entry 5QJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	25	first strand
Strand 2	A	29	37	anti-parallel
Strand 3	A	43	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	61	69	anti-parallel
Strand 3	A	76	84	anti-parallel
Strand 4	A	169	174	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	131	first strand
Strand 2	A	140	149	anti-parallel
Strand 3	A	61	69	parallel
Strand 4	A	76	84	anti-parallel
Strand 5	A	89	93	anti-parallel
Strand 6	A	192	193	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	25	first strand
Strand 2	B	29	37	anti-parallel
Strand 3	B	43	51	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	140	149	anti-parallel
Strand 3	B	61	69	parallel
Strand 4	B	76	84	anti-parallel
Strand 5	B	89	93	anti-parallel
Strand 6	B	192	193	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	140	149	anti-parallel
Strand 3	B	61	69	parallel
Strand 4	B	96	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	140	149	anti-parallel
Strand 3	B	61	69	parallel
Strand 4	B	76	84	anti-parallel
Strand 5	B	169	174	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	25	first strand
Strand 2	C	29	37	anti-parallel
Strand 3	C	43	51	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	126	first strand
Strand 2	C	140	149	anti-parallel
Strand 3	C	61	69	parallel
Strand 4	C	76	84	anti-parallel
Strand 5	C	89	93	anti-parallel
Strand 6	C	191	194	parallel
Strand 7	D	130	131	parallel
Strand 8	D	140	149	anti-parallel
Strand 9	D	61	69	parallel
Strand 10	D	76	83	anti-parallel
Strand 11	D	90	93	anti-parallel
Strand 12	D	192	193	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	140	149	anti-parallel
Strand 3	C	61	69	parallel
Strand 4	C	96	98	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	140	149	anti-parallel
Strand 3	C	61	69	parallel
Strand 4	C	76	84	anti-parallel
Strand 5	C	169	174	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	126	first strand
Strand 2	D	140	149	anti-parallel
Strand 3	D	61	69	parallel
Strand 4	D	96	98	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	61	69	anti-parallel
Strand 3	D	76	83	anti-parallel
Strand 4	D	169	174	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	25	first strand
Strand 2	D	29	37	anti-parallel
Strand 3	D	43	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5QJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5QJX