Analysis of interatomic Contacts of Structural Units in PDB entry:
5QQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5QQS entry

There are 2 chains in PDB entry 5QQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 137MET 578
A
 LEU 137MET 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5QQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
144 159Right-handed alpha
Helix 2
AA2
B
172 175Right-handed 310
Helix 3
AA3
B
201 204Right-handed 310
Helix 4
AA4
B
205 220Right-handed alpha
Helix 5
AA5
B
233 247Right-handed alpha
Helix 6
AA6
B
257 273Right-handed alpha
Helix 7
AA7
B
285 296Right-handed alpha
Helix 8
AA8
B
306 316Right-handed alpha
Helix 9
AA9
B
339 350Right-handed alpha
Helix 10
AB1
B
371 376Right-handed alpha
Helix 11
AB2
B
378 382Right-handed 310
Helix 12
AB3
B
403 414Right-handed alpha
Helix 13
AB4
B
414 419Right-handed alpha
Helix 14
AB5
B
424 440Right-handed alpha
Helix 15
AB6
B
440 464Right-handed alpha
Helix 16
AB7
B
482 496Right-handed alpha
Helix 17
AB8
B
525 543Right-handed alpha
Helix 18
AB9
B
568 576Right-handed alpha
Helix 19
AC1
A
144 159Right-handed alpha
Helix 20
AC2
A
201 204Right-handed 310
Helix 21
AC3
A
205 220Right-handed alpha
Helix 22
AC4
A
233 248Right-handed alpha
Helix 23
AC5
A
257 273Right-handed alpha
Helix 24
AC6
A
285 296Right-handed alpha
Helix 25
AC7
A
306 316Right-handed alpha
Helix 26
AC8
A
339 350Right-handed alpha
Helix 27
AC9
A
371 376Right-handed alpha
Helix 28
AD1
A
378 382Right-handed 310
Helix 29
AD2
A
403 414Right-handed alpha
Helix 30
AD3
A
414 419Right-handed alpha
Helix 31
AD4
A
424 440Right-handed alpha
Helix 32
AD5
A
440 464Right-handed alpha
Helix 33
AD6
A
482 498Right-handed alpha
Helix 34
AD7
A
525 543Right-handed alpha
Helix 35
AD8
A
556 560Right-handed 310
Helix 36
AD9
A
568 576Right-handed alpha
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There are 6 sheets in PDB entry 5QQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 170first strand
Strand 2
B
177 181anti-parallel
Strand 3
B
189 193anti-parallel
Strand 4
B
499 500parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 255first strand
Strand 2
B
398 402anti-parallel
Strand 3
B
384 388anti-parallel
Strand 4
B
353 357parallel
Strand 5
B
323 328parallel
Strand 6
B
277 281parallel
Strand 7
B
298 302parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 479first strand
Strand 2
B
515 518anti-parallel
Strand 3
B
503 504anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
177 180anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
499 500parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 255first strand
Strand 2
A
398 402anti-parallel
Strand 3
A
384 388anti-parallel
Strand 4
A
353 357parallel
Strand 5
A
323 328parallel
Strand 6
A
277 281parallel
Strand 7
A
298 302parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 479first strand
Strand 2
A
515 518anti-parallel
Strand 3
A
503 504anti-parallel
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