Analysis of interatomic Contacts of Structural Units in PDB entry:
5SZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SZJ entry

There are 2 chains in PDB entry 5SZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 175
B
 GLY 531SER 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5SZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
71 76Right-handed alpha
Helix 3
AA3
A
77 79Right-handed 310
Helix 4
AA4
A
93 99Right-handed alpha
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
133 144Right-handed alpha
Helix 8
AA8
A
159 173Right-handed alpha
Helix 9
AA9
B
534 573Right-handed alpha
Helix 10
AB1
B
583 633Right-handed alpha
Helix 11
AB2
B
634 638Right-handed 310
Helix 12
AB3
B
639 682Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5SZJ.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 53first strand
Strand 2
A
56 65anti-parallel
Strand 3
A
8 15parallel
Strand 4
A
84 90parallel
Strand 5
A
116 122parallel
Strand 6
A
147 150parallel
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