Analysis of interatomic Contacts of Structural Units in PDB entry:
5T28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T28 entry

There is 1 chain in PDB entry 5T28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 109TRP 1027
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5T28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 122Right-handed alpha
Helix 2
AA2
A
124 131Right-handed alpha
Helix 3
AA3
A
133 156Right-handed alpha
Helix 4
AA4
A
158 167Right-handed alpha
Helix 5
AA5
A
212 229Right-handed alpha
Helix 6
AA6
A
235 237Right-handed 310
Helix 7
AA7
A
255 258Right-handed 310
Helix 8
AA8
A
259 269Right-handed alpha
Helix 9
AA9
A
279 289Right-handed alpha
Helix 10
AB1
A
382 384Right-handed 310
Helix 11
AB2
A
487 494Right-handed alpha
Helix 12
AB3
A
512 516Right-handed alpha
Helix 13
AB4
A
524 534Right-handed alpha
Helix 14
AB5
A
534 542Right-handed alpha
Helix 15
AB6
A
545 553Right-handed alpha
Helix 16
AB7
A
557 569Right-handed alpha
Helix 17
AB8
A
575 582Right-handed alpha
Helix 18
AB9
A
589 601Right-handed alpha
Helix 19
AC1
A
604 618Right-handed alpha
Helix 20
AC2
A
619 621Right-handed 310
Helix 21
AC3
A
627 640Right-handed alpha
Helix 22
AC4
A
640 653Right-handed alpha
Helix 23
AC5
A
657 675Right-handed alpha
Helix 24
AC6
A
675 703Right-handed alpha
Helix 25
AC7
A
707 720Right-handed alpha
Helix 26
AC8
A
721 728Right-handed alpha
Helix 27
AC9
A
746 749Right-handed 310
Helix 28
AD1
A
784 804Right-handed alpha
Helix 29
AD2
A
834 839Right-handed alpha
Helix 30
AD3
A
850 852Right-handed 310
Helix 31
AD4
A
853 863Right-handed alpha
Helix 32
AD5
A
864 866Right-handed 310
Helix 33
AD6
A
867 890Right-handed alpha
Helix 34
AD7
A
935 943Right-handed alpha
Helix 35
AD8
A
949 970Right-handed alpha
Helix 36
AD9
A
970 981Right-handed alpha
Helix 37
AE1
A
982 985Right-handed 310
Helix 38
AE2
A
986 990Right-handed 310
Helix 39
AE3
A
991 1003Right-handed alpha
Helix 40
AE4
A
1007 1026Right-handed alpha
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There are 8 sheets in PDB entry 5T28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
273 278parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
249 250anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 380first strand
Strand 2
A
322 330anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
435 440anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
363 364anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
416 424anti-parallel
Strand 5
A
442 443anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 733first strand
Strand 2
A
736 741anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
750 751anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
775 780anti-parallel
Strand 4
A
822 826anti-parallel
Strand 5
A
815 819anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
899 902anti-parallel
Strand 3
A
907 909anti-parallel
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