Analysis of interatomic Contacts of Structural Units in PDB entry:
5T5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T5C entry

There are 5 chains in PDB entry 5T5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 61ALA 356
B
 VAL 61ALA 356
C
 C 1 G 8
D
 C 3 G 10
E
 C 1 G 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5T5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 112Right-handed 310
Helix 2
AA2
A
121 125Right-handed 310
Helix 3
AA3
A
127 132Right-handed alpha
Helix 4
AA4
A
143 147Right-handed 310
Helix 5
AA5
A
150 158Right-handed alpha
Helix 6
AA6
A
159 161Right-handed 310
Helix 7
AA7
A
167 173Right-handed alpha
Helix 8
AA8
A
173 186Right-handed alpha
Helix 9
AA9
A
261 264Right-handed 310
Helix 10
AB1
A
268 277Right-handed alpha
Helix 11
AB2
A
293 297Right-handed alpha
Helix 12
AB3
A
303 318Right-handed alpha
Helix 13
AB4
A
321 334Right-handed alpha
Helix 14
AB5
A
340 356Right-handed alpha
Helix 15
AB6
B
108 112Right-handed 310
Helix 16
AB7
B
121 125Right-handed 310
Helix 17
AB8
B
127 132Right-handed alpha
Helix 18
AB9
B
143 148Right-handed 310
Helix 19
AC1
B
150 158Right-handed alpha
Helix 20
AC2
B
159 161Right-handed 310
Helix 21
AC3
B
167 173Right-handed alpha
Helix 22
AC4
B
173 185Right-handed alpha
Helix 23
AC5
B
186 188Right-handed 310
Helix 24
AC6
B
261 264Right-handed 310
Helix 25
AC7
B
268 277Right-handed alpha
Helix 26
AC8
B
293 297Right-handed alpha
Helix 27
AC9
B
303 319Right-handed alpha
Helix 28
AD1
B
321 335Right-handed alpha
Helix 29
AD2
B
340 356Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5T5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
191 199anti-parallel
Strand 5
A
227 235anti-parallel
Strand 6
A
244 252anti-parallel
Strand 7
A
266 267anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
191 199anti-parallel
Strand 5
A
227 235anti-parallel
Strand 6
A
244 252anti-parallel
Strand 7
A
290 292parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
163 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
210 217anti-parallel
Strand 3
B
210 217anti-parallel
Strand 4
B
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
210 217anti-parallel
Strand 3
B
210 217anti-parallel
Strand 4
B
222 223anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
81 85anti-parallel
Strand 3
B
90 98anti-parallel
Strand 4
B
191 199anti-parallel
Strand 5
B
227 235anti-parallel
Strand 6
B
245 252anti-parallel
Strand 7
B
266 267anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
81 85anti-parallel
Strand 3
B
90 98anti-parallel
Strand 4
B
191 199anti-parallel
Strand 5
B
227 235anti-parallel
Strand 6
B
245 252anti-parallel
Strand 7
B
291 292parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
163 166anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il