Analysis of interatomic Contacts of Structural Units in PDB entry:
5TDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TDF entry

There are 3 chains in PDB entry 5TDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 431
B
 SER 487GLY 759
B
 ALA 761ILE 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5TDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
39 47Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
66 70Right-handed 310
Helix 5
AA5
A
77 86Right-handed alpha
Helix 6
AA6
A
114 116Right-handed 310
Helix 7
AA7
A
161 170Right-handed alpha
Helix 8
AA8
A
174 176Right-handed 310
Helix 9
AA9
A
177 195Right-handed alpha
Helix 10
AB1
A
225 234Right-handed alpha
Helix 11
AB2
A
247 259Right-handed alpha
Helix 12
AB3
A
281 295Right-handed alpha
Helix 13
AB4
A
297 301Right-handed 310
Helix 14
AB5
A
312 328Right-handed alpha
Helix 15
AB6
A
349 364Right-handed alpha
Helix 16
AB7
A
364 371Right-handed alpha
Helix 17
AB8
A
383 399Right-handed alpha
Helix 18
AB9
A
412 419Right-handed alpha
Helix 19
AC1
A
425 429Right-handed 310
Helix 20
AC2
B
505 519Right-handed alpha
Helix 21
AC3
B
555 563Right-handed alpha
Helix 22
AC4
B
577 586Right-handed alpha
Helix 23
AC5
B
602 617Right-handed alpha
Helix 24
AC6
B
642 649Right-handed alpha
Helix 25
AC7
B
663 678Right-handed alpha
Helix 26
AC8
B
696 706Right-handed alpha
Helix 27
AC9
B
724 733Right-handed alpha
Helix 28
AD1
B
746 752Right-handed 310
Helix 29
AD2
B
767 770Right-handed 310
Helix 30
AD3
B
771 783Right-handed alpha
Helix 31
AD4
B
789 791Right-handed 310
Helix 32
AD5
B
792 807Right-handed alpha
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There are 8 sheets in PDB entry 5TDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
197 208anti-parallel
Strand 4
A
118 126anti-parallel
Strand 5
A
129 135anti-parallel
Strand 6
A
150 155anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
197 208anti-parallel
Strand 4
A
211 214anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
73 76anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
98 101anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
303 308anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
336 340parallel
Strand 3
A
373 378parallel
Strand 4
A
402 405parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
537 543first strand
Strand 2
B
546 553anti-parallel
Strand 3
B
526 530parallel
Strand 4
B
499 502parallel
Strand 5
B
568 571parallel
Strand 6
B
593 596parallel
Strand 7
B
619 621parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 635first strand
Strand 2
B
628 630anti-parallel
Strand 3
B
681 686anti-parallel
Strand 4
B
657 661parallel
Strand 5
B
712 718parallel
Strand 6
B
740 745parallel
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