Analysis of interatomic Contacts of Structural Units in PDB entry:
5TFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TFM entry

There is 1 chain in PDB entry 5TFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 534LEU 858
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5TFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
583 585Right-handed 310
Helix 2
AA2
A
605 611Right-handed 310
Helix 3
AA3
A
682 686Right-handed 310
Helix 4
AA4
A
730 734Right-handed 310
Helix 5
AA5
A
784 789Right-handed alpha
Helix 6
AA6
A
823 829Right-handed alpha
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There are 9 sheets in PDB entry 5TFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
562 563anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 548first strand
Strand 2
A
629 639parallel
Strand 3
A
613 621anti-parallel
Strand 4
A
574 580anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 560first strand
Strand 2
A
595 600anti-parallel
Strand 3
A
587 592anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
672 673anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 658first strand
Strand 2
A
736 746parallel
Strand 3
A
718 726anti-parallel
Strand 4
A
687 691anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
704 707anti-parallel
Strand 3
A
696 698anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 755first strand
Strand 2
A
779 780anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 764first strand
Strand 2
A
851 857parallel
Strand 3
A
832 839anti-parallel
Strand 4
A
790 794anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 776first strand
Strand 2
A
809 812anti-parallel
Strand 3
A
801 803anti-parallel
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