Analysis of interatomic Contacts of Structural Units in PDB entry:
5THH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5THH entry

There is 1 chain in PDB entry 5THH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 4PRO 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5THH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
23 34Right-handed alpha
Helix 3
AA3
A
49 51Right-handed 310
Helix 4
AA4
A
52 65Right-handed alpha
Helix 5
AA5
A
75 81Right-handed alpha
Helix 6
AA6
A
89 109Right-handed alpha
Helix 7
AA7
A
121 123Right-handed 310
Helix 8
AA8
A
126 138Right-handed alpha
Helix 9
AA9
A
141 149Right-handed alpha
Helix 10
AB1
A
160 177Right-handed alpha
Helix 11
AB2
A
188 199Right-handed alpha
Helix 12
AB3
A
200 203Right-handed 310
Helix 13
AB4
A
237 246Right-handed alpha
Helix 14
AB5
A
258 267Right-handed alpha
Helix 15
AB6
A
267 273Right-handed alpha
Helix 16
AB7
A
280 284Right-handed 310
Helix 17
AB8
A
291 301Right-handed alpha
Helix 18
AB9
A
305 328Right-handed alpha
Helix 19
AC1
A
332 341Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5THH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 22first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
181 185parallel
Strand 4
A
37 43parallel
Strand 5
A
68 74parallel
Strand 6
A
115 119parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
275 277first strand
Strand 2
A
287 289anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il