Analysis of interatomic Contacts of Structural Units in PDB entry:
5TL6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TL6 entry

There are 4 chains in PDB entry 5TL6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 2	LYS 316
D	THR 5	LYS 316
C	MET 79	GLY 156
A	GLU 80	GLY 156

There are 26 helices in PDB entry 5TL6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	33	Right-handed alpha
Helix 2	AA2	B	48	52	Right-handed 310
Helix 3	AA3	B	62	74	Right-handed alpha
Helix 4	AA4	B	79	92	Right-handed alpha
Helix 5	AA5	B	111	122	Right-handed alpha
Helix 6	AA6	B	130	141	Right-handed alpha
Helix 7	AA7	B	145	156	Right-handed alpha
Helix 8	AA8	B	165	175	Right-handed alpha
Helix 9	AA9	B	202	206	Right-handed alpha
Helix 10	AB1	B	213	220	Right-handed alpha
Helix 11	AB2	D	27	32	Right-handed alpha
Helix 12	AB3	D	48	52	Right-handed 310
Helix 13	AB4	D	66	74	Right-handed alpha
Helix 14	AB5	D	79	92	Right-handed alpha
Helix 15	AB6	D	111	122	Right-handed alpha
Helix 16	AB7	D	130	143	Right-handed alpha
Helix 17	AB8	D	145	156	Right-handed alpha
Helix 18	AB9	D	165	176	Right-handed alpha
Helix 19	AC1	D	202	206	Right-handed alpha
Helix 20	AC2	D	213	220	Right-handed alpha
Helix 21	AC3	C	103	116	Right-handed alpha
Helix 22	AC4	C	118	120	Right-handed 310
Helix 23	AC5	C	136	141	Right-handed 310
Helix 24	AC6	A	103	116	Right-handed alpha
Helix 25	AC7	A	118	120	Right-handed 310
Helix 26	AC8	A	136	141	Right-handed 310

There are 12 sheets in PDB entry 5TL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	55	58	parallel
Strand 4	B	35	37	anti-parallel
Strand 5	B	40	41	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	201	first strand
Strand 2	B	183	189	anti-parallel
Strand 3	B	230	239	anti-parallel
Strand 4	B	221	224	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	201	first strand
Strand 2	B	183	189	anti-parallel
Strand 3	B	230	239	anti-parallel
Strand 4	B	311	312	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	242	254	parallel
Strand 3	B	297	307	anti-parallel
Strand 4	B	261	268	anti-parallel
Strand 5	B	271	279	anti-parallel
Strand 6	B	283	287	anti-parallel
Strand 7	B	290	294	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	22	first strand
Strand 2	D	6	11	anti-parallel
Strand 3	D	55	58	parallel
Strand 4	D	35	36	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	201	first strand
Strand 2	D	183	190	anti-parallel
Strand 3	D	230	239	anti-parallel
Strand 4	D	221	224	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	201	first strand
Strand 2	D	183	190	anti-parallel
Strand 3	D	230	239	anti-parallel
Strand 4	D	310	312	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	242	253	parallel
Strand 3	D	298	307	anti-parallel
Strand 4	D	261	267	anti-parallel
Strand 5	D	272	279	anti-parallel
Strand 6	D	283	287	anti-parallel
Strand 7	D	290	294	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	82	87	anti-parallel
Strand 3	C	147	152	parallel
Strand 4	C	122	126	anti-parallel
Strand 5	C	129	131	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	82	87	anti-parallel
Strand 3	A	147	152	parallel
Strand 4	A	122	126	anti-parallel
Strand 5	A	129	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TL6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TL6