Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TOL entry

There is 1 chain in PDB entry 5TOL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45ASN 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5TOL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 51Right-handed 310
Helix 2
AA2
A
101 105Right-handed 310
Helix 3
AA3
A
171 175Right-handed 310
Helix 4
AA4
A
183 192Right-handed alpha
Helix 5
AA5
A
266 270Right-handed 310
Helix 6
AA6
A
286 300Right-handed alpha
Helix 7
AA7
A
306 311Right-handed alpha
Helix 8
AA8
A
324 328Right-handed 310
Helix 9
AA9
A
349 353Right-handed alpha
Helix 10
AB1
A
382 387Right-handed alpha
Helix 11
AB2
A
426 431Right-handed 310
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There are 5 sheets in PDB entry 5TOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 119first strand
Strand 2
A
122 134anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
54 56anti-parallel
Strand 5
A
218 224anti-parallel
Strand 6
A
198 202anti-parallel
Strand 7
A
389 394anti-parallel
Strand 8
A
399 405anti-parallel
Strand 9
A
232 240anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 119first strand
Strand 2
A
122 134anti-parallel
Strand 3
A
142 154anti-parallel
Strand 4
A
86 89parallel
Strand 5
A
165 168anti-parallel
Strand 6
A
73 80parallel
Strand 7
A
62 68anti-parallel
Strand 8
A
54 56anti-parallel
Strand 9
A
218 224anti-parallel
Strand 10
A
198 202anti-parallel
Strand 11
A
389 394anti-parallel
Strand 12
A
399 405anti-parallel
Strand 13
A
232 240anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
273 275anti-parallel
Strand 3
A
379 381parallel
Strand 4
A
282 285anti-parallel
Strand 5
A
372 375parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
251 256anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
342 348anti-parallel
Strand 5
A
417 423anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
367 370anti-parallel
Strand 3
A
354 356anti-parallel
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