Analysis of interatomic Contacts of Structural Units in PDB entry:
5TTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TTE entry

There are 3 chains in PDB entry 5TTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 100TYR 554
E
 SER 4ASP 154
F
 GLY -2GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5TTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
105 125Right-handed alpha
Helix 2
AA2
B
127 138Right-handed alpha
Helix 3
AA3
B
141 151Right-handed alpha
Helix 4
AA4
B
153 162Right-handed alpha
Helix 5
AA5
B
209 222Right-handed alpha
Helix 6
AA6
B
242 247Right-handed alpha
Helix 7
AA7
B
251 269Right-handed alpha
Helix 8
AA8
B
316 330Right-handed alpha
Helix 9
AA9
B
402 432Right-handed alpha
Helix 10
AB1
B
433 439Right-handed alpha
Helix 11
AB2
B
443 449Right-handed alpha
Helix 12
AB3
B
455 481Right-handed alpha
Helix 13
AB4
B
485 509Right-handed alpha
Helix 14
AB5
B
517 548Right-handed alpha
Helix 15
AB6
E
5 18Right-handed alpha
Helix 16
AB7
E
87 91Right-handed 310
Helix 17
AB8
E
100 114Right-handed alpha
Helix 18
AB9
E
122 132Right-handed alpha
Helix 19
AC1
E
132 148Right-handed alpha
Helix 20
AC2
F
22 35Right-handed alpha
Helix 21
AC3
F
37 41Right-handed 310
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There are 8 sheets in PDB entry 5TTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
284 286anti-parallel
Strand 3
B
273 275anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
192 194anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
206 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
302 304anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 343first strand
Strand 2
B
350 352anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
370 372anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 27first strand
Strand 2
E
34 39anti-parallel
Strand 3
E
51 56anti-parallel
Strand 4
E
67 70anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 17first strand
Strand 2
F
1 6anti-parallel
Strand 3
F
65 70parallel
Strand 4
F
42 45anti-parallel
Strand 5
F
48 50anti-parallel
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