Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TUU entry

There are 2 chains in PDB entry 5TUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 196GLN 339
B
 ARG 91ASN 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5TUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
196 248Right-handed alpha
Helix 2
AA2
A
296 304Right-handed alpha
Helix 3
AA3
A
308 312Right-handed 310
Helix 4
AA4
A
315 325Right-handed alpha
Helix 5
AA5
A
326 329Right-handed 310
Helix 6
AA6
A
330 338Right-handed alpha
Helix 7
AA7
B
95 130Right-handed alpha
Helix 8
AA8
B
131 135Right-handed 310
Helix 9
AA9
B
142 149Right-handed alpha
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There are 3 sheets in PDB entry 5TUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
B
139 141anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
262 267anti-parallel
Strand 3
B
152 158anti-parallel
Strand 4
B
191 194anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
282 287anti-parallel
Strand 3
B
179 184anti-parallel
Strand 4
B
164 166anti-parallel
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