Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5TVB entry
There are 2 chains in PDB entry 5TVB
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ALA 3 | THR 142 |
B
|
ALA 3 | THR 142 |
Back to top of page
There are 6
helices in PDB entry 5TVB. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 4 |
9 | Right-handed alpha |
Helix 2 |
AA2 | A
| 10 |
15 | Right-handed alpha |
Helix 3 |
AA3 | A
| 18 |
141 | Right-handed alpha |
Helix 4 |
AA4 | B
| 4 |
9 | Right-handed alpha |
Helix 5 |
AA5 | B
| 10 |
15 | Right-handed alpha |
Helix 6 |
AA6 | B
| 18 |
142 | Right-handed alpha |
Back to top of page
There are no sheets in PDB entry
5TVB
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il