Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U0A entry

There are 14 chains in PDB entry 5U0A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ILE 226
C	PRO 17	SER 538
D	THR 2	PHE 368
E	THR 2	PHE 368
F	THR 2	PHE 368
G	THR 2	ALA 367
H	THR 2	ALA 367
I	THR 2	ALA 367
J	TYR 5	GLU 229
K	A 1	G 61
L	SER 3	GLU 229
M	G 16	G 65
N	SER 2	GLN 248
O	C 1	C 50

There are126 helices in PDB entry 5U0A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	32	Right-handed alpha
Helix 2	AA2	A	143	154	Right-handed alpha
Helix 3	AA3	A	198	209	Right-handed alpha
Helix 4	AA4	A	213	217	Right-handed 310
Helix 5	AA5	C	43	50	Right-handed alpha
Helix 6	AA6	C	61	73	Right-handed alpha
Helix 7	AA7	C	75	82	Right-handed alpha
Helix 8	AA8	C	89	105	Right-handed alpha
Helix 9	AA9	C	108	119	Right-handed alpha
Helix 10	AB1	C	120	123	Right-handed 310
Helix 11	AB2	C	137	142	Right-handed alpha
Helix 12	AB3	C	147	152	Right-handed alpha
Helix 13	AB4	C	178	191	Right-handed alpha
Helix 14	AB5	C	227	235	Right-handed alpha
Helix 15	AB6	C	266	271	Right-handed alpha
Helix 16	AB7	C	338	345	Right-handed 310
Helix 17	AB8	C	352	359	Right-handed alpha
Helix 18	AB9	C	367	372	Right-handed alpha
Helix 19	AC1	C	396	407	Right-handed alpha
Helix 20	AC2	C	409	446	Right-handed alpha
Helix 21	AC3	C	464	487	Right-handed alpha
Helix 22	AC4	C	502	516	Right-handed alpha
Helix 23	AC5	C	517	520	Right-handed 310
Helix 24	AC6	C	522	534	Right-handed alpha
Helix 25	AC7	C	535	538	Right-handed 310
Helix 26	AC8	D	39	55	Right-handed alpha
Helix 27	AC9	D	165	170	Right-handed alpha
Helix 28	AD1	D	239	247	Right-handed alpha
Helix 29	AD2	D	248	266	Right-handed alpha
Helix 30	AD3	D	296	301	Right-handed 310
Helix 31	AD4	D	310	329	Right-handed alpha
Helix 32	AD5	D	346	350	Right-handed 310
Helix 33	AD6	D	355	368	Right-handed alpha
Helix 34	AD7	E	39	56	Right-handed alpha
Helix 35	AD8	E	64	76	Right-handed alpha
Helix 36	AD9	E	79	93	Right-handed alpha
Helix 37	AE1	E	121	134	Right-handed alpha
Helix 38	AE2	E	134	144	Right-handed alpha
Helix 39	AE3	E	152	161	Right-handed alpha
Helix 40	AE4	E	164	171	Right-handed alpha
Helix 41	AE5	E	239	247	Right-handed alpha
Helix 42	AE6	E	248	266	Right-handed alpha
Helix 43	AE7	E	296	301	Right-handed 310
Helix 44	AE8	E	309	329	Right-handed alpha
Helix 45	AE9	E	346	350	Right-handed 310
Helix 46	AF1	E	355	368	Right-handed alpha
Helix 47	AF2	F	39	56	Right-handed alpha
Helix 48	AF3	F	64	76	Right-handed alpha
Helix 49	AF4	F	79	93	Right-handed alpha
Helix 50	AF5	F	121	134	Right-handed alpha
Helix 51	AF6	F	134	144	Right-handed alpha
Helix 52	AF7	F	152	161	Right-handed alpha
Helix 53	AF8	F	164	171	Right-handed alpha
Helix 54	AF9	F	239	247	Right-handed alpha
Helix 55	AG1	F	248	266	Right-handed alpha
Helix 56	AG2	F	296	301	Right-handed 310
Helix 57	AG3	F	309	329	Right-handed alpha
Helix 58	AG4	F	346	350	Right-handed 310
Helix 59	AG5	F	355	368	Right-handed alpha
Helix 60	AG6	G	39	56	Right-handed alpha
Helix 61	AG7	G	64	76	Right-handed alpha
Helix 62	AG8	G	79	93	Right-handed alpha
Helix 63	AG9	G	121	134	Right-handed alpha
Helix 64	AH1	G	134	144	Right-handed alpha
Helix 65	AH2	G	152	161	Right-handed alpha
Helix 66	AH3	G	164	171	Right-handed alpha
Helix 67	AH4	G	239	247	Right-handed alpha
Helix 68	AH5	G	248	266	Right-handed alpha
Helix 69	AH6	G	296	301	Right-handed 310
Helix 70	AH7	G	309	329	Right-handed alpha
Helix 71	AH8	G	346	350	Right-handed 310
Helix 72	AH9	G	355	367	Right-handed alpha
Helix 73	AI1	H	39	56	Right-handed alpha
Helix 74	AI2	H	64	76	Right-handed alpha
Helix 75	AI3	H	79	93	Right-handed alpha
Helix 76	AI4	H	121	134	Right-handed alpha
Helix 77	AI5	H	134	144	Right-handed alpha
Helix 78	AI6	H	152	161	Right-handed alpha
Helix 79	AI7	H	164	171	Right-handed alpha
Helix 80	AI8	H	239	247	Right-handed alpha
Helix 81	AI9	H	248	266	Right-handed alpha
Helix 82	AJ1	H	271	276	Right-handed alpha
Helix 83	AJ2	H	296	301	Right-handed 310
Helix 84	AJ3	H	309	329	Right-handed alpha
Helix 85	AJ4	H	346	350	Right-handed 310
Helix 86	AJ5	H	355	367	Right-handed alpha
Helix 87	AJ6	I	39	56	Right-handed alpha
Helix 88	AJ7	I	64	76	Right-handed alpha
Helix 89	AJ8	I	79	93	Right-handed alpha
Helix 90	AJ9	I	121	134	Right-handed alpha
Helix 91	AK1	I	134	144	Right-handed alpha
Helix 92	AK2	I	152	161	Right-handed alpha
Helix 93	AK3	I	164	171	Right-handed alpha
Helix 94	AK4	I	239	247	Right-handed alpha
Helix 95	AK5	I	248	266	Right-handed alpha
Helix 96	AK6	I	296	301	Right-handed 310
Helix 97	AK7	I	309	329	Right-handed alpha
Helix 98	AK8	I	346	350	Right-handed 310
Helix 99	AK9	I	355	367	Right-handed alpha
Helix 100	AL1	J	6	24	Right-handed alpha
Helix 101	AL2	J	24	33	Right-handed alpha
Helix 102	AL3	J	41	45	Right-handed 310
Helix 103	AL4	J	47	52	Right-handed alpha
Helix 104	AL5	J	53	55	Right-handed 310
Helix 105	AL6	J	75	90	Right-handed alpha
Helix 106	AL7	J	92	98	Right-handed alpha
Helix 107	AL8	J	138	149	Right-handed alpha
Helix 108	AL9	J	153	165	Right-handed alpha
Helix 109	AM1	J	168	186	Right-handed alpha
Helix 110	AM2	J	191	202	Right-handed alpha
Helix 111	AM3	J	209	228	Right-handed alpha
Helix 112	AM4	L	4	24	Right-handed alpha
Helix 113	AM5	L	24	33	Right-handed alpha
Helix 114	AM6	L	45	51	Right-handed alpha
Helix 115	AM7	L	75	90	Right-handed alpha
Helix 116	AM8	L	92	98	Right-handed alpha
Helix 117	AM9	L	138	149	Right-handed alpha
Helix 118	AN1	L	153	167	Right-handed alpha
Helix 119	AN2	L	168	186	Right-handed alpha
Helix 120	AN3	L	191	205	Right-handed alpha
Helix 121	AN4	L	205	229	Right-handed alpha
Helix 122	AN5	N	31	44	Right-handed alpha
Helix 123	AN6	N	81	85	Right-handed 310
Helix 124	AN7	N	121	130	Right-handed alpha
Helix 125	AN8	N	157	164	Right-handed alpha
Helix 126	AN9	N	236	248	Right-handed alpha

There are 32 sheets in PDB entry 5U0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	57	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	3	7	anti-parallel
Strand 4	A	86	88	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	224	225	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	188	190	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	182	183	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	54	58	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	278	284	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	224	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	387	394	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	322	325	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	33	38	anti-parallel
Strand 3	D	191	193	anti-parallel
Strand 4	D	220	238	anti-parallel
Strand 5	D	200	206	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	220	238	anti-parallel
Strand 3	D	3	15	anti-parallel
Strand 4	D	283	289	anti-parallel
Strand 5	D	336	339	anti-parallel
Strand 6	D	351	352	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	191	193	anti-parallel
Strand 4	E	229	238	anti-parallel
Strand 5	E	186	188	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	191	193	anti-parallel
Strand 4	E	229	238	anti-parallel
Strand 5	E	3	12	anti-parallel
Strand 6	E	283	289	anti-parallel
Strand 7	E	337	339	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	117	120	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	207	first strand
Strand 2	E	218	226	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	33	38	anti-parallel
Strand 3	F	191	193	anti-parallel
Strand 4	F	229	238	anti-parallel
Strand 5	F	186	188	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	33	38	anti-parallel
Strand 3	F	191	193	anti-parallel
Strand 4	F	229	238	anti-parallel
Strand 5	F	3	12	anti-parallel
Strand 6	F	283	289	anti-parallel
Strand 7	F	337	339	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	117	120	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	206	first strand
Strand 2	F	220	226	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	30	first strand
Strand 2	G	33	38	anti-parallel
Strand 3	G	191	193	anti-parallel
Strand 4	G	229	238	anti-parallel
Strand 5	G	186	188	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	30	first strand
Strand 2	G	33	38	anti-parallel
Strand 3	G	191	193	anti-parallel
Strand 4	G	229	238	anti-parallel
Strand 5	G	3	12	anti-parallel
Strand 6	G	283	289	anti-parallel
Strand 7	G	337	339	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	117	120	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	205	first strand
Strand 2	G	221	226	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	30	first strand
Strand 2	H	33	38	anti-parallel
Strand 3	H	191	193	anti-parallel
Strand 4	H	229	238	anti-parallel
Strand 5	H	186	188	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	30	first strand
Strand 2	H	33	38	anti-parallel
Strand 3	H	191	193	anti-parallel
Strand 4	H	229	238	anti-parallel
Strand 5	H	3	12	anti-parallel
Strand 6	H	283	289	anti-parallel
Strand 7	H	337	339	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	117	120	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	207	first strand
Strand 2	H	218	226	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	30	first strand
Strand 2	I	33	38	anti-parallel
Strand 3	I	191	193	anti-parallel
Strand 4	I	229	238	anti-parallel
Strand 5	I	186	188	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	30	first strand
Strand 2	I	33	38	anti-parallel
Strand 3	I	191	193	anti-parallel
Strand 4	I	229	238	anti-parallel
Strand 5	I	3	12	anti-parallel
Strand 6	I	283	289	anti-parallel
Strand 7	I	337	339	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	62	first strand
Strand 2	I	117	120	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	150	152	first strand
Strand 2	N	4	8	anti-parallel
Strand 3	N	112	118	anti-parallel
Strand 4	N	58	65	anti-parallel
Strand 5	N	180	186	anti-parallel
Strand 6	N	213	226	anti-parallel
Strand 7	N	198	206	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	13	first strand
Strand 2	N	101	109	anti-parallel
Strand 3	N	23	24	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	13	first strand
Strand 2	N	101	109	anti-parallel
Strand 3	N	68	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U0A

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0A