Analysis of interatomic Contacts of Structural Units in PDB entry:
5U4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U4J entry

There are 19 chains in PDB entry 5U4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 G 6 G 515
a
 G 517 C 526
a
 C 528 G 1401
a
 C 1403 U 1406
a
 A 1408 G 1497
a
 A 1499 G 1515
a
 G 1517 G 1517
a
 C 1520 A 1534
A
 G 1910 G 1910
A
 A 1912 A 1916
A
 A 1918 C 1920
c
 LYS 150GLU 170
d
 ALA 2GLY 66
e
 GLU 10GLU 145
z
 A 43 G 48
x
 U 28 C 42
l
 ALA 2ALA 124
v
 ASP 127VAL 327
w
 SER 2ARG 48
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5U4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
d
7 16Right-handed alpha
Helix 2
AA2
d
27 32Right-handed alpha
Helix 3
AA3
d
49 65Right-handed alpha
Helix 4
AA4
e
55 69Right-handed alpha
Helix 5
AA5
e
108 119Right-handed alpha
Helix 6
AA6
e
132 145Right-handed alpha
Helix 7
AA7
l
3 10Right-handed alpha
Helix 8
AA8
v
139 160Right-handed alpha
Helix 9
AA9
v
187 192Right-handed alpha
Helix 10
AB1
v
297 316Right-handed alpha
Helix 11
AB2
w
14 21Right-handed alpha
Helix 12
AB3
w
22 26Right-handed 310
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There are 6 sheets in PDB entry 5U4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
151 155first strand
Strand 2
c
164 168anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
12 24first strand
Strand 2
e
29 40anti-parallel
Strand 3
e
45 50anti-parallel
Strand 4
e
72 73anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
85 89first strand
Strand 2
e
92 98anti-parallel
Strand 3
e
123 128anti-parallel
Strand 4
e
105 106parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
30 40first strand
Strand 2
l
50 57anti-parallel
Strand 3
l
62 66anti-parallel
Strand 4
l
95 97parallel
Strand 5
l
79 83anti-parallel
Strand 6
l
30 40anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
164 170first strand
Strand 2
v
176 182anti-parallel
Strand 3
v
129 135anti-parallel
Strand 4
v
213 223anti-parallel
Strand 5
v
197 204anti-parallel
Strand 6
v
322 326parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
164 170first strand
Strand 2
v
176 182anti-parallel
Strand 3
v
129 135anti-parallel
Strand 4
v
213 223anti-parallel
Strand 5
w
28 29anti-parallel
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