Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U7R entry

There are 4 chains in PDB entry 5U7R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	ARG 417
B	SER 25	ARG 417
C	SER 25	ARG 417
D	SER 25	VAL 95

There are 78 helices in PDB entry 5U7R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	36	Right-handed alpha
Helix 2	AA2	A	42	58	Right-handed alpha
Helix 3	AA3	A	61	64	Right-handed 310
Helix 4	AA4	A	65	86	Right-handed alpha
Helix 5	AA5	A	125	131	Right-handed alpha
Helix 6	AA6	A	136	147	Right-handed alpha
Helix 7	AA7	A	176	181	Right-handed alpha
Helix 8	AA8	A	187	207	Right-handed alpha
Helix 9	AA9	A	216	218	Right-handed 310
Helix 10	AB1	A	258	264	Right-handed alpha
Helix 11	AB2	A	273	290	Right-handed alpha
Helix 12	AB3	A	298	308	Right-handed alpha
Helix 13	AB4	A	308	313	Right-handed alpha
Helix 14	AB5	A	322	333	Right-handed alpha
Helix 15	AB6	A	345	350	Right-handed alpha
Helix 16	AB7	A	351	355	Right-handed 310
Helix 17	AB8	A	363	367	Right-handed 310
Helix 18	AB9	A	407	411	Right-handed 310
Helix 19	AC1	B	28	36	Right-handed alpha
Helix 20	AC2	B	42	58	Right-handed alpha
Helix 21	AC3	B	61	64	Right-handed 310
Helix 22	AC4	B	65	86	Right-handed alpha
Helix 23	AC5	B	88	90	Right-handed 310
Helix 24	AC6	B	125	131	Right-handed alpha
Helix 25	AC7	B	136	147	Right-handed alpha
Helix 26	AC8	B	176	181	Right-handed alpha
Helix 27	AC9	B	187	208	Right-handed alpha
Helix 28	AD1	B	216	218	Right-handed 310
Helix 29	AD2	B	253	257	Right-handed 310
Helix 30	AD3	B	258	263	Right-handed alpha
Helix 31	AD4	B	264	266	Right-handed 310
Helix 32	AD5	B	273	290	Right-handed alpha
Helix 33	AD6	B	298	308	Right-handed alpha
Helix 34	AD7	B	308	313	Right-handed alpha
Helix 35	AD8	B	322	333	Right-handed alpha
Helix 36	AD9	B	345	351	Right-handed alpha
Helix 37	AE1	B	352	355	Right-handed 310
Helix 38	AE2	B	363	367	Right-handed 310
Helix 39	AE3	B	407	411	Right-handed 310
Helix 40	AE4	C	29	36	Right-handed alpha
Helix 41	AE5	C	42	58	Right-handed alpha
Helix 42	AE6	C	59	64	Right-handed alpha
Helix 43	AE7	C	65	85	Right-handed alpha
Helix 44	AE8	C	88	90	Right-handed 310
Helix 45	AE9	C	125	131	Right-handed alpha
Helix 46	AF1	C	136	147	Right-handed alpha
Helix 47	AF2	C	177	182	Right-handed alpha
Helix 48	AF3	C	187	207	Right-handed alpha
Helix 49	AF4	C	232	236	Right-handed 310
Helix 50	AF5	C	258	265	Right-handed alpha
Helix 51	AF6	C	273	288	Right-handed alpha
Helix 52	AF7	C	298	308	Right-handed alpha
Helix 53	AF8	C	308	313	Right-handed alpha
Helix 54	AF9	C	322	333	Right-handed alpha
Helix 55	AG1	C	335	339	Right-handed 310
Helix 56	AG2	C	345	350	Right-handed alpha
Helix 57	AG3	C	351	355	Right-handed 310
Helix 58	AG4	C	363	367	Right-handed 310
Helix 59	AG5	C	407	411	Right-handed 310
Helix 60	AG6	D	28	36	Right-handed alpha
Helix 61	AG7	D	42	58	Right-handed alpha
Helix 62	AG8	D	59	64	Right-handed alpha
Helix 63	AG9	D	65	85	Right-handed alpha
Helix 64	AH1	D	88	90	Right-handed 310
Helix 65	AH2	D	125	130	Right-handed alpha
Helix 66	AH3	D	136	147	Right-handed alpha
Helix 67	AH4	D	176	184	Right-handed alpha
Helix 68	AH5	D	187	207	Right-handed alpha
Helix 69	AH6	D	232	236	Right-handed 310
Helix 70	AH7	D	258	264	Right-handed alpha
Helix 71	AH8	D	273	290	Right-handed alpha
Helix 72	AH9	D	298	308	Right-handed alpha
Helix 73	AI1	D	308	313	Right-handed alpha
Helix 74	AI2	D	322	333	Right-handed alpha
Helix 75	AI3	D	344	351	Right-handed alpha
Helix 76	AI4	D	352	355	Right-handed 310
Helix 77	AI5	D	363	367	Right-handed 310
Helix 78	AI6	D	407	411	Right-handed 310

There are 13 sheets in PDB entry 5U7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	101	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	155	160	anti-parallel
Strand 6	A	415	416	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	228	230	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	101	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	117	124	anti-parallel
Strand 4	B	164	170	anti-parallel
Strand 5	B	155	160	anti-parallel
Strand 6	B	415	416	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	237	238	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	228	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	269	271	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	101	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	117	124	anti-parallel
Strand 4	C	164	169	anti-parallel
Strand 5	C	155	160	anti-parallel
Strand 6	C	415	416	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	220	222	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	237	238	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	100	first strand
Strand 2	D	105	111	anti-parallel
Strand 3	D	117	124	anti-parallel
Strand 4	D	164	169	anti-parallel
Strand 5	D	155	160	anti-parallel
Strand 6	D	415	416	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	222	first strand
Strand 2	D	228	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U7R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7R