Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U7Z entry

There are 4 chains in PDB entry 5U7Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 28	PHE 140
B	CYS 143	TRP 395
C	THR 28	PHE 140
D	CYS 143	GLY 291

There are 26 helices in PDB entry 5U7Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	62	88	Right-handed alpha
Helix 3	AA3	A	89	106	Right-handed alpha
Helix 4	AA4	A	111	124	Right-handed alpha
Helix 5	AA5	A	126	135	Right-handed alpha
Helix 6	AA6	A	135	140	Right-handed alpha
Helix 7	AA7	B	177	183	Right-handed alpha
Helix 8	AA8	B	230	241	Right-handed alpha
Helix 9	AA9	B	248	260	Right-handed alpha
Helix 10	AB1	B	262	273	Right-handed alpha
Helix 11	AB2	B	333	345	Right-handed alpha
Helix 12	AB3	B	346	349	Right-handed 310
Helix 13	AB4	B	350	358	Right-handed alpha
Helix 14	AB5	C	57	61	Right-handed 310
Helix 15	AB6	C	62	88	Right-handed alpha
Helix 16	AB7	C	89	106	Right-handed alpha
Helix 17	AB8	C	111	124	Right-handed alpha
Helix 18	AB9	C	126	135	Right-handed alpha
Helix 19	AC1	C	135	140	Right-handed alpha
Helix 20	AC2	D	177	183	Right-handed alpha
Helix 21	AC3	D	230	241	Right-handed alpha
Helix 22	AC4	D	248	260	Right-handed alpha
Helix 23	AC5	D	262	273	Right-handed alpha
Helix 24	AC6	D	333	345	Right-handed alpha
Helix 25	AC7	D	346	349	Right-handed 310
Helix 26	AC8	D	350	358	Right-handed alpha

There are 6 sheets in PDB entry 5U7Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	B	380	386	anti-parallel
Strand 3	B	368	375	anti-parallel
Strand 4	B	155	162	anti-parallel
Strand 5	B	144	149	anti-parallel
Strand 6	B	315	318	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	B	186	193	parallel
Strand 3	B	196	204	anti-parallel
Strand 4	B	212	215	anti-parallel
Strand 5	B	219	225	anti-parallel
Strand 6	B	279	284	anti-parallel
Strand 7	B	291	296	anti-parallel
Strand 8	B	301	306	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	175	176	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	D	380	386	anti-parallel
Strand 3	D	368	375	anti-parallel
Strand 4	D	155	162	anti-parallel
Strand 5	D	144	149	anti-parallel
Strand 6	D	315	318	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	D	186	193	parallel
Strand 3	D	196	204	anti-parallel
Strand 4	D	212	215	anti-parallel
Strand 5	D	219	225	anti-parallel
Strand 6	D	279	284	anti-parallel
Strand 7	D	291	296	anti-parallel
Strand 8	D	301	306	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U7Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7Z