Analysis of interatomic Contacts of Structural Units in PDB entry:
5UC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UC7 entry

There are 2 chains in PDB entry 5UC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN -1GLY 273
A
ALA 275VAL 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5UC7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
61 75Right-handed alpha
Helix 3
AA3
A
85 99Right-handed alpha
Helix 4
AA4
A
111 130Right-handed alpha
Helix 5
AA5
A
148 153Right-handed alpha
Helix 6
AA6
A
161 166Right-handed alpha
Helix 7
AA7
A
187 201Right-handed alpha
Helix 8
AA8
A
225 239Right-handed alpha
Helix 9
AA9
A
258 263Right-handed 310
Helix 10
AB1
A
273 278Right-handed 310
Helix 11
AB2
A
290 299Right-handed alpha
Helix 12
AB3
A
313 328Right-handed alpha
Helix 13
AB4
A
330 348Right-handed alpha
Helix 14
AB5
A
349 353Right-handed 310
Helix 15
AB6
A
375 386Right-handed alpha
Helix 16
AB7
A
406 421Right-handed alpha
Helix 17
AB8
A
422 427Right-handed 310
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There are 4 sheets in PDB entry 5UC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
388 389parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 109first strand
Strand 2
A
284 289anti-parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
241 245parallel
Strand 5
A
205 210parallel
Strand 6
A
136 140parallel
Strand 7
A
173 175parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 215first strand
Strand 2
A
221 222anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
356 362first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
396 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il