Analysis of interatomic Contacts of Structural Units in PDB entry:
5UK7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UK7 entry

There are 16 chains in PDB entry 5UK7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 65
B	ALA 2	VAL 68
C	ALA 2	VAL 68
D	ALA 2	VAL 68
E	ALA 2	PRO 67
F	ALA 2	ARG 66
G	ALA 2	VAL 68
H	GLY 4	VAL 68
I	GLY 4	VAL 68
J	ALA 2	ARG 66
K	ALA 2	SER 69
L	ALA 2	PRO 67
N	C 1	A 20
M	T 1	G 20
Y	T 1	G 20
Z	C 1	A 20

There are 12 helices in PDB entry 5UK7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	18	Right-handed alpha
Helix 2	AA2	B	7	18	Right-handed alpha
Helix 3	AA3	C	7	18	Right-handed alpha
Helix 4	AA4	D	7	18	Right-handed alpha
Helix 5	AA5	E	7	18	Right-handed alpha
Helix 6	AA6	F	8	18	Right-handed alpha
Helix 7	AA7	G	7	18	Right-handed alpha
Helix 8	AA8	H	7	18	Right-handed alpha
Helix 9	AA9	I	8	18	Right-handed alpha
Helix 10	AB1	J	8	18	Right-handed alpha
Helix 11	AB2	K	8	18	Right-handed alpha
Helix 12	AB3	L	7	18	Right-handed alpha

There are 3 sheets in PDB entry 5UK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 26 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	35	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	A	59	64	anti-parallel
Strand 4	B	51	55	anti-parallel
Strand 5	B	43	47	anti-parallel
Strand 6	B	31	39	anti-parallel
Strand 7	B	21	26	anti-parallel
Strand 8	B	59	64	anti-parallel
Strand 9	C	51	55	anti-parallel
Strand 10	C	43	47	anti-parallel
Strand 11	C	31	36	anti-parallel
Strand 12	C	21	26	anti-parallel
Strand 13	C	59	64	anti-parallel
Strand 14	G	51	55	anti-parallel
Strand 15	G	43	47	anti-parallel
Strand 16	G	31	39	anti-parallel
Strand 17	G	21	26	anti-parallel
Strand 18	G	59	64	anti-parallel
Strand 19	H	51	55	anti-parallel
Strand 20	H	43	47	anti-parallel
Strand 21	H	31	39	anti-parallel
Strand 22	H	22	26	anti-parallel
Strand 23	H	59	64	anti-parallel
Strand 24	I	51	55	anti-parallel
Strand 25	I	43	47	anti-parallel
Strand 26	I	36	39	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	53	55	anti-parallel
Strand 3	I	59	64	anti-parallel
Strand 4	I	22	26	anti-parallel
Strand 5	I	31	34	anti-parallel

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There are 31 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	22	26	anti-parallel
Strand 3	E	59	64	anti-parallel
Strand 4	F	51	55	anti-parallel
Strand 5	F	43	47	anti-parallel
Strand 6	F	31	39	anti-parallel
Strand 7	F	22	26	anti-parallel
Strand 8	F	59	64	anti-parallel
Strand 9	J	51	55	anti-parallel
Strand 10	J	43	47	anti-parallel
Strand 11	J	31	39	anti-parallel
Strand 12	J	21	26	anti-parallel
Strand 13	J	59	64	anti-parallel
Strand 14	K	52	55	anti-parallel
Strand 15	K	43	47	anti-parallel
Strand 16	K	31	39	anti-parallel
Strand 17	K	22	26	anti-parallel
Strand 18	K	59	63	anti-parallel
Strand 19	L	51	55	anti-parallel
Strand 20	L	43	47	anti-parallel
Strand 21	L	31	39	anti-parallel
Strand 22	L	22	26	anti-parallel
Strand 23	L	59	64	anti-parallel
Strand 24	D	51	55	anti-parallel
Strand 25	D	43	47	anti-parallel
Strand 26	D	31	39	anti-parallel
Strand 27	D	21	26	anti-parallel
Strand 28	D	59	64	anti-parallel
Strand 29	E	51	55	anti-parallel
Strand 30	E	43	47	anti-parallel
Strand 31	E	36	39	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UK7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UK7