Analysis of interatomic Contacts of Structural Units in PDB entry:
5ULW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ULW entry

There are 4 chains in PDB entry 5ULW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
A 867 C 872
T
T 839 T 839
T
G 841 T 847
A
SER 26LYS 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5ULW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
37 47Right-handed alpha
Helix 2
AA2
A
48 51Right-handed 310
Helix 3
AA3
A
67 73Right-handed alpha
Helix 4
AA4
A
81 88Right-handed alpha
Helix 5
AA5
A
99 117Right-handed alpha
Helix 6
AA6
A
132 142Right-handed alpha
Helix 7
AA7
A
144 149Right-handed alpha
Helix 8
AA8
A
159 161Right-handed 310
Helix 9
AA9
A
167 192Right-handed alpha
Helix 10
AB1
A
202 211Right-handed alpha
Helix 11
AB2
A
222 224Right-handed 310
Helix 12
AB3
A
225 232Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
Helix 14
AB5
A
243 253Right-handed alpha
Helix 15
AB6
A
257 264Right-handed alpha
Helix 16
AB7
A
265 286Right-handed alpha
Helix 17
AB8
A
313 336Right-handed alpha
Helix 18
AB9
A
365 370Right-handed alpha
Helix 19
AC1
A
379 395Right-handed alpha
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There are 3 sheets in PDB entry 5ULW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 123first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
195 200anti-parallel
Strand 5
A
218 220parallel
Strand 6
A
156 157parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 80first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
92 95parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 307first strand
Strand 2
A
405 413anti-parallel
Strand 3
A
339 347anti-parallel
Strand 4
A
357 363anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il