Analysis of interatomic Contacts of Structural Units in PDB entry:
5UM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UM4 entry

There are 3 chains in PDB entry 5UM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 43ARG 52
A
ASN 54THR 309
A
GLN 311PRO 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 5UM4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
254 258Right-handed 310
Helix 2
AA2
A
286 291Right-handed 310
Helix 3
AA3
A
341 345Right-handed 310
Helix 4
AA4
A
357 368Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5UM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 273first strand
Strand 2
A
208 215anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
321 323parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
243 251first strand
Strand 2
A
223 237anti-parallel
Strand 3
A
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
243 251first strand
Strand 2
A
223 237anti-parallel
Strand 3
A
294 303anti-parallel
Strand 4
A
309 317anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
325 327first strand
Strand 2
A
348 350anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il