Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UQ9 entry

There are 8 chains in PDB entry 5UQ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	THR 470
B	ALA 2	GLY 471
C	ALA 2	THR 470
D	ALA 2	THR 470
E	ALA 2	TRP 469
F	ALA 2	THR 470
G	ALA 2	THR 467
H	ALA 2	THR 467

There are181 helices in PDB entry 5UQ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	36	45	Right-handed alpha
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	78	89	Right-handed alpha
Helix 5	AA5	A	90	92	Right-handed 310
Helix 6	AA6	A	105	119	Right-handed alpha
Helix 7	AA7	A	133	138	Right-handed alpha
Helix 8	AA8	A	149	161	Right-handed alpha
Helix 9	AA9	A	178	208	Right-handed alpha
Helix 10	AB1	A	212	224	Right-handed alpha
Helix 11	AB2	A	230	242	Right-handed alpha
Helix 12	AB3	A	250	254	Right-handed 310
Helix 13	AB4	A	262	275	Right-handed alpha
Helix 14	AB5	A	278	293	Right-handed alpha
Helix 15	AB6	A	293	304	Right-handed alpha
Helix 16	AB7	A	315	350	Right-handed alpha
Helix 17	AB8	A	354	362	Right-handed alpha
Helix 18	AB9	A	370	383	Right-handed alpha
Helix 19	AC1	A	388	391	Right-handed 310
Helix 20	AC2	A	392	417	Right-handed alpha
Helix 21	AC3	A	420	434	Right-handed alpha
Helix 22	AC4	A	439	451	Right-handed alpha
Helix 23	AC5	B	12	25	Right-handed alpha
Helix 24	AC6	B	36	44	Right-handed alpha
Helix 25	AC7	B	57	64	Right-handed alpha
Helix 26	AC8	B	78	89	Right-handed alpha
Helix 27	AC9	B	90	92	Right-handed 310
Helix 28	AD1	B	105	119	Right-handed alpha
Helix 29	AD2	B	130	138	Right-handed alpha
Helix 30	AD3	B	149	161	Right-handed alpha
Helix 31	AD4	B	178	208	Right-handed alpha
Helix 32	AD5	B	212	224	Right-handed alpha
Helix 33	AD6	B	230	242	Right-handed alpha
Helix 34	AD7	B	250	254	Right-handed 310
Helix 35	AD8	B	264	275	Right-handed alpha
Helix 36	AD9	B	278	292	Right-handed alpha
Helix 37	AE1	B	293	304	Right-handed alpha
Helix 38	AE2	B	315	350	Right-handed alpha
Helix 39	AE3	B	354	363	Right-handed alpha
Helix 40	AE4	B	370	383	Right-handed alpha
Helix 41	AE5	B	388	391	Right-handed 310
Helix 42	AE6	B	392	417	Right-handed alpha
Helix 43	AE7	B	420	434	Right-handed alpha
Helix 44	AE8	B	439	452	Right-handed alpha
Helix 45	AE9	C	12	24	Right-handed alpha
Helix 46	AF1	C	35	37	Right-handed 310
Helix 47	AF2	C	38	45	Right-handed alpha
Helix 48	AF3	C	57	63	Right-handed alpha
Helix 49	AF4	C	78	89	Right-handed alpha
Helix 50	AF5	C	105	118	Right-handed alpha
Helix 51	AF6	C	149	161	Right-handed alpha
Helix 52	AF7	C	178	208	Right-handed alpha
Helix 53	AF8	C	212	224	Right-handed alpha
Helix 54	AF9	C	230	241	Right-handed alpha
Helix 55	AG1	C	250	254	Right-handed 310
Helix 56	AG2	C	261	275	Right-handed alpha
Helix 57	AG3	C	278	293	Right-handed alpha
Helix 58	AG4	C	293	304	Right-handed alpha
Helix 59	AG5	C	315	350	Right-handed alpha
Helix 60	AG6	C	354	363	Right-handed alpha
Helix 61	AG7	C	370	383	Right-handed alpha
Helix 62	AG8	C	388	391	Right-handed 310
Helix 63	AG9	C	392	417	Right-handed alpha
Helix 64	AH1	C	420	434	Right-handed alpha
Helix 65	AH2	C	439	451	Right-handed alpha
Helix 66	AH3	D	12	25	Right-handed alpha
Helix 67	AH4	D	36	44	Right-handed alpha
Helix 68	AH5	D	57	65	Right-handed alpha
Helix 69	AH6	D	78	89	Right-handed alpha
Helix 70	AH7	D	90	92	Right-handed 310
Helix 71	AH8	D	105	119	Right-handed alpha
Helix 72	AH9	D	130	138	Right-handed alpha
Helix 73	AI1	D	146	148	Right-handed 310
Helix 74	AI2	D	149	161	Right-handed alpha
Helix 75	AI3	D	178	208	Right-handed alpha
Helix 76	AI4	D	212	224	Right-handed alpha
Helix 77	AI5	D	230	241	Right-handed alpha
Helix 78	AI6	D	250	254	Right-handed 310
Helix 79	AI7	D	264	275	Right-handed alpha
Helix 80	AI8	D	278	292	Right-handed alpha
Helix 81	AI9	D	293	304	Right-handed alpha
Helix 82	AJ1	D	315	350	Right-handed alpha
Helix 83	AJ2	D	354	362	Right-handed alpha
Helix 84	AJ3	D	370	383	Right-handed alpha
Helix 85	AJ4	D	388	391	Right-handed 310
Helix 86	AJ5	D	392	401	Right-handed alpha
Helix 87	AJ6	D	402	417	Right-handed alpha
Helix 88	AJ7	D	420	434	Right-handed alpha
Helix 89	AJ8	D	439	450	Right-handed alpha
Helix 90	AJ9	E	12	25	Right-handed alpha
Helix 91	AK1	E	36	44	Right-handed alpha
Helix 92	AK2	E	57	64	Right-handed alpha
Helix 93	AK3	E	78	89	Right-handed alpha
Helix 94	AK4	E	90	92	Right-handed 310
Helix 95	AK5	E	105	119	Right-handed alpha
Helix 96	AK6	E	130	138	Right-handed alpha
Helix 97	AK7	E	146	148	Right-handed 310
Helix 98	AK8	E	149	161	Right-handed alpha
Helix 99	AK9	E	178	208	Right-handed alpha
Helix 100	AL1	E	212	224	Right-handed alpha
Helix 101	AL2	E	230	241	Right-handed alpha
Helix 102	AL3	E	250	254	Right-handed 310
Helix 103	AL4	E	263	275	Right-handed alpha
Helix 104	AL5	E	278	293	Right-handed alpha
Helix 105	AL6	E	293	304	Right-handed alpha
Helix 106	AL7	E	315	350	Right-handed alpha
Helix 107	AL8	E	354	364	Right-handed alpha
Helix 108	AL9	E	370	382	Right-handed alpha
Helix 109	AM1	E	388	391	Right-handed 310
Helix 110	AM2	E	392	417	Right-handed alpha
Helix 111	AM3	E	420	434	Right-handed alpha
Helix 112	AM4	E	439	451	Right-handed alpha
Helix 113	AM5	F	12	25	Right-handed alpha
Helix 114	AM6	F	36	44	Right-handed alpha
Helix 115	AM7	F	57	64	Right-handed alpha
Helix 116	AM8	F	78	89	Right-handed alpha
Helix 117	AM9	F	90	92	Right-handed 310
Helix 118	AN1	F	105	119	Right-handed alpha
Helix 119	AN2	F	130	138	Right-handed alpha
Helix 120	AN3	F	146	148	Right-handed 310
Helix 121	AN4	F	149	161	Right-handed alpha
Helix 122	AN5	F	178	208	Right-handed alpha
Helix 123	AN6	F	212	224	Right-handed alpha
Helix 124	AN7	F	230	242	Right-handed alpha
Helix 125	AN8	F	250	254	Right-handed 310
Helix 126	AN9	F	263	275	Right-handed alpha
Helix 127	AO1	F	278	292	Right-handed alpha
Helix 128	AO2	F	293	302	Right-handed alpha
Helix 129	AO3	F	315	350	Right-handed alpha
Helix 130	AO4	F	354	363	Right-handed alpha
Helix 131	AO5	F	370	383	Right-handed alpha
Helix 132	AO6	F	388	391	Right-handed 310
Helix 133	AO7	F	392	417	Right-handed alpha
Helix 134	AO8	F	420	434	Right-handed alpha
Helix 135	AO9	F	439	452	Right-handed alpha
Helix 136	AP1	G	13	21	Right-handed alpha
Helix 137	AP2	G	35	43	Right-handed alpha
Helix 138	AP3	G	57	63	Right-handed alpha
Helix 139	AP4	G	77	89	Right-handed alpha
Helix 140	AP5	G	90	92	Right-handed 310
Helix 141	AP6	G	105	118	Right-handed alpha
Helix 142	AP7	G	133	137	Right-handed 310
Helix 143	AP8	G	146	148	Right-handed 310
Helix 144	AP9	G	149	161	Right-handed alpha
Helix 145	AQ1	G	178	208	Right-handed alpha
Helix 146	AQ2	G	212	224	Right-handed alpha
Helix 147	AQ3	G	230	242	Right-handed alpha
Helix 148	AQ4	G	250	254	Right-handed 310
Helix 149	AQ5	G	263	275	Right-handed alpha
Helix 150	AQ6	G	278	293	Right-handed alpha
Helix 151	AQ7	G	293	304	Right-handed alpha
Helix 152	AQ8	G	315	349	Right-handed alpha
Helix 153	AQ9	G	355	364	Right-handed alpha
Helix 154	AR1	G	371	383	Right-handed alpha
Helix 155	AR2	G	388	391	Right-handed 310
Helix 156	AR3	G	392	402	Right-handed alpha
Helix 157	AR4	G	402	417	Right-handed alpha
Helix 158	AR5	G	420	433	Right-handed alpha
Helix 159	AR6	G	439	450	Right-handed alpha
Helix 160	AR7	H	12	25	Right-handed alpha
Helix 161	AR8	H	37	44	Right-handed alpha
Helix 162	AR9	H	57	64	Right-handed alpha
Helix 163	AS1	H	78	89	Right-handed alpha
Helix 164	AS2	H	90	92	Right-handed 310
Helix 165	AS3	H	105	118	Right-handed alpha
Helix 166	AS4	H	132	137	Right-handed alpha
Helix 167	AS5	H	146	148	Right-handed 310
Helix 168	AS6	H	149	161	Right-handed alpha
Helix 169	AS7	H	178	208	Right-handed alpha
Helix 170	AS8	H	212	226	Right-handed alpha
Helix 171	AS9	H	231	241	Right-handed alpha
Helix 172	AT1	H	250	254	Right-handed 310
Helix 173	AT2	H	263	275	Right-handed alpha
Helix 174	AT3	H	278	292	Right-handed alpha
Helix 175	AT4	H	293	302	Right-handed alpha
Helix 176	AT5	H	315	350	Right-handed alpha
Helix 177	AT6	H	354	363	Right-handed alpha
Helix 178	AT7	H	370	383	Right-handed alpha
Helix 179	AT8	H	394	417	Right-handed alpha
Helix 180	AT9	H	420	434	Right-handed alpha
Helix 181	AU1	H	439	451	Right-handed alpha

There are 19 sheets in PDB entry 5UQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	29	32	parallel
Strand 3	A	6	9	parallel
Strand 4	A	70	73	parallel
Strand 5	A	97	100	parallel
Strand 6	A	122	129	parallel
Strand 7	A	140	145	anti-parallel
Strand 8	A	175	176	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	460	465	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	29	32	parallel
Strand 3	B	6	9	parallel
Strand 4	B	70	73	parallel
Strand 5	B	97	100	parallel
Strand 6	B	122	129	parallel
Strand 7	B	140	145	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	460	465	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	29	32	parallel
Strand 3	C	6	9	parallel
Strand 4	C	70	73	parallel
Strand 5	C	97	100	parallel
Strand 6	C	122	129	parallel
Strand 7	C	140	145	anti-parallel
Strand 8	C	175	176	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	29	32	parallel
Strand 3	D	6	9	parallel
Strand 4	D	70	73	parallel
Strand 5	D	97	100	parallel
Strand 6	D	122	125	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	140	142	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	460	465	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	29	32	parallel
Strand 3	E	6	9	parallel
Strand 4	E	70	73	parallel
Strand 5	E	97	100	parallel
Strand 6	E	122	125	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	129	first strand
Strand 2	E	140	142	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	457	first strand
Strand 2	E	460	465	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	29	32	parallel
Strand 3	F	6	9	parallel
Strand 4	F	70	73	parallel
Strand 5	F	97	100	parallel
Strand 6	F	122	125	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	129	first strand
Strand 2	F	140	142	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	460	465	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	6	8	parallel
Strand 3	G	70	73	parallel
Strand 4	G	97	100	parallel
Strand 5	G	122	129	parallel
Strand 6	G	140	145	anti-parallel
Strand 7	G	175	176	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	455	457	first strand
Strand 2	G	460	465	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	29	32	parallel
Strand 3	H	6	9	parallel
Strand 4	H	70	73	parallel
Strand 5	H	97	100	parallel
Strand 6	H	122	125	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	129	first strand
Strand 2	H	140	142	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	455	457	first strand
Strand 2	H	460	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UQ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQ9