Analysis of interatomic Contacts of Structural Units in PDB entry:
5UV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UV8 entry

There are 4 chains in PDB entry 5UV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 28CYS 293
B
ASN 15ALA 121
G
PRO 25ASP 294
I
TYR 13ALA 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5UV8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
169 175Right-handed alpha
Helix 2
AA2
A
203 206Right-handed 310
Helix 3
AA3
B
16 28Right-handed alpha
Helix 4
AA4
B
35 40Right-handed 310
Helix 5
AA5
B
41 50Right-handed alpha
Helix 6
AA6
B
53 67Right-handed alpha
Helix 7
AA7
B
71 79Right-handed alpha
Helix 8
AA8
B
80 85Right-handed 310
Helix 9
AA9
B
103 121Right-handed alpha
Helix 10
AB1
G
169 174Right-handed alpha
Helix 11
AB2
G
203 206Right-handed 310
Helix 12
AB3
I
15 29Right-handed alpha
Helix 13
AB4
I
36 40Right-handed 310
Helix 14
AB5
I
41 50Right-handed alpha
Helix 15
AB6
I
53 67Right-handed alpha
Helix 16
AB7
I
71 79Right-handed alpha
Helix 17
AB8
I
80 85Right-handed 310
Helix 18
AB9
I
103 121Right-handed alpha
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There are 12 sheets in PDB entry 5UV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 33first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
67 69anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 61first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
90 96anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 115first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
162 167anti-parallel
Strand 4
A
153 156anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
148 150first strand
Strand 2
A
135 142anti-parallel
Strand 3
A
179 187anti-parallel
Strand 4
A
196 201anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 217first strand
Strand 2
A
221 227anti-parallel
Strand 3
A
259 263anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
249 255first strand
Strand 2
A
236 244anti-parallel
Strand 3
A
267 276anti-parallel
Strand 4
A
289 292anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
31 33first strand
Strand 2
G
38 40anti-parallel
Strand 3
G
67 69anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
59 61first strand
Strand 2
G
50 54anti-parallel
Strand 3
G
79 85anti-parallel
Strand 4
G
90 96anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
108 115first strand
Strand 2
G
119 125anti-parallel
Strand 3
G
162 167anti-parallel
Strand 4
G
155 156anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
149 150first strand
Strand 2
G
135 141anti-parallel
Strand 3
G
179 187anti-parallel
Strand 4
G
196 201anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
212 217first strand
Strand 2
G
221 227anti-parallel
Strand 3
G
259 263anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
250 255first strand
Strand 2
G
236 244anti-parallel
Strand 3
G
267 276anti-parallel
Strand 4
G
289 292anti-parallel
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