Analysis of interatomic Contacts of Structural Units in PDB entry:
5UY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UY6 entry

There is 1 chain in PDB entry 5UY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 159ARG 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5UY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 205Right-handed alpha
Helix 2
AA2
A
230 243Right-handed alpha
Helix 3
AA3
A
285 306Right-handed alpha
Helix 4
AA4
A
314 316Right-handed 310
Helix 5
AA5
A
350 354Right-handed 310
Helix 6
AA6
A
355 359Right-handed 310
Helix 7
AA7
A
368 386Right-handed alpha
Helix 8
AA8
A
394 405Right-handed alpha
Helix 9
AA9
A
416 427Right-handed alpha
Helix 10
AB1
A
436 441Right-handed alpha
Helix 11
AB2
A
443 448Right-handed alpha
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There are 4 sheets in PDB entry 5UY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
165 172anti-parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
189 197anti-parallel
Strand 5
A
262 268anti-parallel
Strand 6
A
251 256anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
335 336anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
326 328anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
366 367anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il