Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UZR entry

There are 2 chains in PDB entry 5UZR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	SER 463
D	SER 30	LYS 464

There are 50 helices in PDB entry 5UZR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	56	Right-handed alpha
Helix 2	AA2	A	65	70	Right-handed alpha
Helix 3	AA3	A	98	105	Right-handed alpha
Helix 4	AA4	A	115	126	Right-handed alpha
Helix 5	AA5	A	130	144	Right-handed alpha
Helix 6	AA6	A	148	158	Right-handed alpha
Helix 7	AA7	A	163	175	Right-handed alpha
Helix 8	AA8	A	176	178	Right-handed 310
Helix 9	AA9	A	179	187	Right-handed alpha
Helix 10	AB1	A	190	192	Right-handed 310
Helix 11	AB2	A	193	222	Right-handed alpha
Helix 12	AB3	A	235	245	Right-handed alpha
Helix 13	AB4	A	248	262	Right-handed alpha
Helix 14	AB5	A	269	280	Right-handed alpha
Helix 15	AB6	A	284	297	Right-handed alpha
Helix 16	AB7	A	298	303	Right-handed alpha
Helix 17	AB8	A	303	320	Right-handed alpha
Helix 18	AB9	A	324	338	Right-handed alpha
Helix 19	AC1	A	354	368	Right-handed alpha
Helix 20	AC2	A	371	392	Right-handed alpha
Helix 21	AC3	A	400	403	Right-handed 310
Helix 22	AC4	A	404	412	Right-handed alpha
Helix 23	AC5	A	416	418	Right-handed 310
Helix 24	AC6	A	419	442	Right-handed alpha
Helix 25	AC7	A	453	463	Right-handed alpha
Helix 26	AC8	D	32	56	Right-handed alpha
Helix 27	AC9	D	65	70	Right-handed alpha
Helix 28	AD1	D	98	105	Right-handed alpha
Helix 29	AD2	D	115	126	Right-handed alpha
Helix 30	AD3	D	130	144	Right-handed alpha
Helix 31	AD4	D	148	158	Right-handed alpha
Helix 32	AD5	D	163	175	Right-handed alpha
Helix 33	AD6	D	176	178	Right-handed 310
Helix 34	AD7	D	179	187	Right-handed alpha
Helix 35	AD8	D	190	192	Right-handed 310
Helix 36	AD9	D	193	222	Right-handed alpha
Helix 37	AE1	D	235	245	Right-handed alpha
Helix 38	AE2	D	248	262	Right-handed alpha
Helix 39	AE3	D	269	280	Right-handed alpha
Helix 40	AE4	D	284	297	Right-handed alpha
Helix 41	AE5	D	298	303	Right-handed alpha
Helix 42	AE6	D	303	320	Right-handed alpha
Helix 43	AE7	D	324	338	Right-handed alpha
Helix 44	AE8	D	354	368	Right-handed alpha
Helix 45	AE9	D	371	392	Right-handed alpha
Helix 46	AF1	D	401	403	Right-handed 310
Helix 47	AF2	D	404	412	Right-handed alpha
Helix 48	AF3	D	416	418	Right-handed 310
Helix 49	AF4	D	419	442	Right-handed alpha
Helix 50	AF5	D	453	463	Right-handed alpha

There are 6 sheets in PDB entry 5UZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	D	59	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	D	450	452	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	90	93	anti-parallel
Strand 3	A	96	97	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	D	76	79	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	90	93	anti-parallel
Strand 3	D	96	97	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	396	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UZR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZR