Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V2C entry

There are 3 chains in PDB entry 5V2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 11ALA 344
B
GLY 2ARG 505
C
ALA 23ALA 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are248 helices in PDB entry 5V2C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
30 55Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
101 108Right-handed alpha
Helix 6
AA6
A
109 137Right-handed alpha
Helix 7
AA7
A
142 159Right-handed alpha
Helix 8
AA8
A
159 166Right-handed alpha
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
176 191Right-handed alpha
Helix 11
AB2
A
192 194Right-handed 310
Helix 12
AB3
A
195 222Right-handed alpha
Helix 13
AB4
A
232 237Right-handed 310
Helix 14
AB5
A
247 259Right-handed alpha
Helix 15
AB6
A
260 264Right-handed 310
Helix 16
AB7
A
267 294Right-handed alpha
Helix 17
AB8
A
316 332Right-handed alpha
Helix 18
AB9
B
6 13Right-handed 310
Helix 19
AC1
B
15 45Right-handed alpha
Helix 20
AC2
B
54 58Right-handed 310
Helix 21
AC3
B
62 69Right-handed alpha
Helix 22
AC4
B
92 117Right-handed alpha
Helix 23
AC5
B
120 124Right-handed 310
Helix 24
AC6
B
134 156Right-handed alpha
Helix 25
AC7
B
186 191Right-handed 310
Helix 26
AC8
B
194 219Right-handed alpha
Helix 27
AC9
B
222 229Right-handed alpha
Helix 28
AD1
B
233 259Right-handed alpha
Helix 29
AD2
B
264 269Right-handed alpha
Helix 30
AD3
B
271 277Right-handed alpha
Helix 31
AD4
B
278 295Right-handed alpha
Helix 32
AD5
B
297 304Right-handed alpha
Helix 33
AD6
B
306 313Right-handed alpha
Helix 34
AD7
B
314 318Right-handed 310
Helix 35
AD8
B
329 333Right-handed 310
Helix 36
AD9
B
391 396Right-handed alpha
Helix 37
AE1
B
413 425Right-handed alpha
Helix 38
AE2
B
446 475Right-handed alpha
Helix 39
AE3
B
476 479Right-handed 310
Helix 40
AE4
B
487 491Right-handed 310
Helix 41
AE5
B
501 505Right-handed 310
Helix 42
AE6
C
27 32Right-handed alpha
Helix 43
AE7
C
34 43Right-handed 310
Helix 44
AE8
C
45 74Right-handed alpha
Helix 45
AE9
C
80 84Right-handed 310
Helix 46
AF1
C
87 95Right-handed alpha
Helix 47
AF2
C
100 104Right-handed 310
Helix 48
AF3
C
108 135Right-handed alpha
Helix 49
AF4
C
153 182Right-handed alpha
Helix 50
AF5
C
205 214Right-handed alpha
Helix 51
AF6
C
222 227Right-handed 310
Helix 52
AF7
C
229 254Right-handed alpha
Helix 53
AF8
C
257 264Right-handed alpha
Helix 54
AF9
C
267 293Right-handed alpha
Helix 55
AG1
C
298 303Right-handed alpha
Helix 56
AG2
C
305 324Right-handed alpha
Helix 57
AG3
C
353 359Right-handed 310
Helix 58
AG4
C
366 368Right-handed 310
Helix 59
AG5
C
376 383Right-handed alpha
Helix 60
AG6
C
385 397Right-handed alpha
Helix 61
AG7
C
421 454Right-handed alpha
Helix 62
AG8
C
460 469Right-handed 310
Helix 63
AG9
D
13 23Right-handed alpha
Helix 64
AH1
D
30 55Right-handed alpha
Helix 65
AH2
D
57 62Right-handed alpha
Helix 66
AH3
D
82 86Right-handed 310
Helix 67
AH4
D
100 107Right-handed alpha
Helix 68
AH5
D
108 137Right-handed alpha
Helix 69
AH6
D
140 158Right-handed alpha
Helix 70
AH7
D
158 164Right-handed alpha
Helix 71
AH8
D
166 170Right-handed 310
Helix 72
AH9
D
175 190Right-handed alpha
Helix 73
AI1
D
191 193Right-handed 310
Helix 74
AI2
D
194 221Right-handed alpha
Helix 75
AI3
D
231 235Right-handed 310
Helix 76
AI4
D
245 257Right-handed alpha
Helix 77
AI5
D
263 290Right-handed alpha
Helix 78
AI6
D
298 308Right-handed alpha
Helix 79
AI7
D
313 334Right-handed alpha
Helix 80
AI8
D
335 338Right-handed 310
Helix 81
AI9
D
342 346Right-handed 310
Helix 82
AJ1
E
9 15Right-handed alpha
Helix 83
AJ2
E
16 40Right-handed alpha
Helix 84
AJ3
E
41 48Right-handed alpha
Helix 85
AJ4
E
71 84Right-handed alpha
Helix 86
AJ5
F
17 41Right-handed alpha
Helix 87
AJ6
H
5 12Right-handed alpha
Helix 88
AJ7
H
13 16Right-handed 310
Helix 89
AJ8
H
27 50Right-handed alpha
Helix 90
AJ9
I
2 25Right-handed alpha
Helix 91
AK1
J
9 32Right-handed alpha
Helix 92
AK2
K
12 17Right-handed 310
Helix 93
AK3
K
18 25Right-handed alpha
Helix 94
AK4
K
27 43Right-handed alpha
Helix 95
AK5
L
13 37Right-handed alpha
Helix 96
AK6
M
6 31Right-handed alpha
Helix 97
AK7
O
6 11Right-handed alpha
Helix 98
AK8
O
14 18Right-handed 310
Helix 99
AK9
O
179 181Right-handed 310
Helix 100
AL1
O
182 187Right-handed alpha
Helix 101
AL2
T
2 23Right-handed alpha
Helix 102
AL3
U
11 18Right-handed alpha
Helix 103
AL4
U
19 23Right-handed 310
Helix 104
AL5
U
31 38Right-handed 310
Helix 105
AL6
U
43 52Right-handed alpha
Helix 106
AL7
U
57 64Right-handed 310
Helix 107
AL8
U
68 79Right-handed alpha
Helix 108
AL9
U
88 93Right-handed alpha
Helix 109
AM1
U
94 96Right-handed 310
Helix 110
AM2
V
22 37Right-handed alpha
Helix 111
AM3
V
37 42Right-handed alpha
Helix 112
AM4
V
43 45Right-handed 310
Helix 113
AM5
V
55 62Right-handed alpha
Helix 114
AM6
V
68 78Right-handed alpha
Helix 115
AM7
V
101 105Right-handed 310
Helix 116
AM8
V
108 127Right-handed alpha
Helix 117
AM9
V
128 130Right-handed 310
Helix 118
AN1
V
133 137Right-handed 310
Helix 119
AN2
Y
19 42Right-handed alpha
Helix 120
AN3
X
4 35Right-handed alpha
Helix 121
AN4
Z
2 29Right-handed alpha
Helix 122
AN5
Z
32 58Right-handed alpha
Helix 123
AN6
Z
59 61Right-handed 310
Helix 124
AN7
a
12 22Right-handed alpha
Helix 125
AN8
a
30 55Right-handed alpha
Helix 126
AN9
a
70 74Right-handed 310
Helix 127
AO1
a
95 99Right-handed 310
Helix 128
AO2
a
101 108Right-handed alpha
Helix 129
AO3
a
109 138Right-handed alpha
Helix 130
AO4
a
142 159Right-handed alpha
Helix 131
AO5
a
159 166Right-handed alpha
Helix 132
AO6
a
167 171Right-handed 310
Helix 133
AO7
a
176 191Right-handed alpha
Helix 134
AO8
a
192 194Right-handed 310
Helix 135
AO9
a
195 222Right-handed alpha
Helix 136
AP1
a
232 237Right-handed 310
Helix 137
AP2
a
247 259Right-handed alpha
Helix 138
AP3
a
260 264Right-handed 310
Helix 139
AP4
a
267 294Right-handed alpha
Helix 140
AP5
a
316 332Right-handed alpha
Helix 141
AP6
b
6 13Right-handed 310
Helix 142
AP7
b
15 45Right-handed alpha
Helix 143
AP8
b
54 58Right-handed 310
Helix 144
AP9
b
62 69Right-handed alpha
Helix 145
AQ1
b
92 117Right-handed alpha
Helix 146
AQ2
b
120 124Right-handed 310
Helix 147
AQ3
b
134 156Right-handed alpha
Helix 148
AQ4
b
186 191Right-handed 310
Helix 149
AQ5
b
194 219Right-handed alpha
Helix 150
AQ6
b
222 229Right-handed alpha
Helix 151
AQ7
b
233 259Right-handed alpha
Helix 152
AQ8
b
264 269Right-handed alpha
Helix 153
AQ9
b
271 277Right-handed alpha
Helix 154
AR1
b
278 294Right-handed alpha
Helix 155
AR2
b
297 304Right-handed alpha
Helix 156
AR3
b
306 313Right-handed alpha
Helix 157
AR4
b
314 318Right-handed 310
Helix 158
AR5
b
329 333Right-handed 310
Helix 159
AR6
b
391 396Right-handed alpha
Helix 160
AR7
b
413 425Right-handed alpha
Helix 161
AR8
b
446 475Right-handed alpha
Helix 162
AR9
b
476 479Right-handed 310
Helix 163
AS1
b
487 492Right-handed alpha
Helix 164
AS2
b
501 505Right-handed 310
Helix 165
AS3
c
27 32Right-handed alpha
Helix 166
AS4
c
34 43Right-handed 310
Helix 167
AS5
c
45 74Right-handed alpha
Helix 168
AS6
c
80 84Right-handed 310
Helix 169
AS7
c
87 95Right-handed alpha
Helix 170
AS8
c
100 104Right-handed 310
Helix 171
AS9
c
108 135Right-handed alpha
Helix 172
AT1
c
153 182Right-handed alpha
Helix 173
AT2
c
205 214Right-handed alpha
Helix 174
AT3
c
222 227Right-handed 310
Helix 175
AT4
c
229 254Right-handed alpha
Helix 176
AT5
c
257 264Right-handed alpha
Helix 177
AT6
c
267 293Right-handed alpha
Helix 178
AT7
c
298 303Right-handed alpha
Helix 179
AT8
c
305 325Right-handed alpha
Helix 180
AT9
c
353 359Right-handed 310
Helix 181
AU1
c
366 368Right-handed 310
Helix 182
AU2
c
376 383Right-handed alpha
Helix 183
AU3
c
385 397Right-handed alpha
Helix 184
AU4
c
421 454Right-handed alpha
Helix 185
AU5
c
460 469Right-handed 310
Helix 186
AU6
d
13 23Right-handed alpha
Helix 187
AU7
d
32 55Right-handed alpha
Helix 188
AU8
d
57 62Right-handed alpha
Helix 189
AU9
d
82 86Right-handed 310
Helix 190
AV1
d
100 108Right-handed alpha
Helix 191
AV2
d
108 137Right-handed alpha
Helix 192
AV3
d
140 158Right-handed alpha
Helix 193
AV4
d
158 164Right-handed alpha
Helix 194
AV5
d
166 170Right-handed 310
Helix 195
AV6
d
175 190Right-handed alpha
Helix 196
AV7
d
191 193Right-handed 310
Helix 197
AV8
d
194 220Right-handed alpha
Helix 198
AV9
d
231 235Right-handed 310
Helix 199
AW1
d
245 258Right-handed alpha
Helix 200
AW2
d
263 290Right-handed alpha
Helix 201
AW3
d
298 308Right-handed alpha
Helix 202
AW4
d
313 334Right-handed alpha
Helix 203
AW5
d
335 338Right-handed 310
Helix 204
AW6
d
342 346Right-handed 310
Helix 205
AW7
e
9 15Right-handed alpha
Helix 206
AW8
e
16 40Right-handed alpha
Helix 207
AW9
e
41 48Right-handed alpha
Helix 208
AX1
e
71 84Right-handed alpha
Helix 209
AX2
f
17 41Right-handed alpha
Helix 210
AX3
h
5 12Right-handed alpha
Helix 211
AX4
h
13 16Right-handed 310
Helix 212
AX5
h
27 50Right-handed alpha
Helix 213
AX6
h
61 65Right-handed 310
Helix 214
AX7
i
2 25Right-handed alpha
Helix 215
AX8
j
9 32Right-handed alpha
Helix 216
AX9
k
12 17Right-handed 310
Helix 217
AY1
k
18 23Right-handed alpha
Helix 218
AY2
k
24 26Right-handed 310
Helix 219
AY3
k
27 43Right-handed alpha
Helix 220
AY4
l
13 37Right-handed alpha
Helix 221
AY5
m
6 31Right-handed alpha
Helix 222
AY6
o
6 11Right-handed alpha
Helix 223
AY7
o
14 18Right-handed 310
Helix 224
AY8
o
179 181Right-handed 310
Helix 225
AY9
o
182 187Right-handed alpha
Helix 226
AZ1
t
2 23Right-handed alpha
Helix 227
AZ2
u
11 17Right-handed alpha
Helix 228
AZ3
u
18 23Right-handed 310
Helix 229
AZ4
u
31 38Right-handed 310
Helix 230
AZ5
u
43 53Right-handed alpha
Helix 231
AZ6
u
57 64Right-handed 310
Helix 232
AZ7
u
68 79Right-handed alpha
Helix 233
AZ8
u
88 93Right-handed alpha
Helix 234
AZ9
u
94 96Right-handed 310
Helix 235
BA1
v
22 37Right-handed alpha
Helix 236
BA2
v
37 42Right-handed alpha
Helix 237
BA3
v
43 45Right-handed 310
Helix 238
BA4
v
55 62Right-handed alpha
Helix 239
BA5
v
68 78Right-handed alpha
Helix 240
BA6
v
94 98Right-handed 310
Helix 241
BA7
v
101 105Right-handed 310
Helix 242
BA8
v
108 127Right-handed alpha
Helix 243
BA9
v
128 130Right-handed 310
Helix 244
BB1
v
133 137Right-handed 310
Helix 245
BB2
y
19 42Right-handed alpha
Helix 246
BB3
x
4 35Right-handed alpha
Helix 247
BB4
z
2 29Right-handed alpha
Helix 248
BB5
z
32 62Right-handed alpha
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There are 30 sheets in PDB entry 5V2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
81 82first strand
Strand 2
A
174 175anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
297 298first strand
Strand 2
C
402 403parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 4first strand
Strand 2
L
10 11parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
166 168first strand
Strand 2
B
177 179anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
377 380first strand
Strand 2
B
369 371anti-parallel
Strand 3
B
353 356anti-parallel
Strand 4
B
336 347anti-parallel
Strand 5
B
398 402anti-parallel
Strand 6
B
410 411anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
377 380first strand
Strand 2
B
369 371anti-parallel
Strand 3
B
353 356anti-parallel
Strand 4
B
336 347anti-parallel
Strand 5
B
429 433anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
185 187first strand
Strand 2
C
195 197anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
341 343first strand
Strand 2
C
349 351anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
370 371first strand
Strand 2
C
374 375anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
77 78first strand
Strand 2
D
173 174anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
30 31first strand
Strand 2
O
135 136anti-parallel
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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
65 67first strand
Strand 2
O
38 53anti-parallel
Strand 3
O
232 245anti-parallel
Strand 4
O
210 220anti-parallel
Strand 5
O
192 205anti-parallel
Strand 6
O
141 149anti-parallel
Strand 7
O
126 128anti-parallel
Strand 8
O
93 101anti-parallel
Strand 9
O
78 87anti-parallel
Strand 10
O
38 53anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
69 70first strand
Strand 2
O
103 109anti-parallel
Strand 3
O
115 121anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
25 26first strand
Strand 2
U
82 83parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
9 11first strand
Strand 2
V
18 20anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
81 82first strand
Strand 2
a
174 175anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
297 298first strand
Strand 2
c
402 403parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
3 4first strand
Strand 2
l
10 11parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
166 168first strand
Strand 2
b
177 179anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
377 380first strand
Strand 2
b
369 371anti-parallel
Strand 3
b
353 356anti-parallel
Strand 4
b
336 347anti-parallel
Strand 5
b
398 402anti-parallel
Strand 6
b
410 411anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
377 380first strand
Strand 2
b
369 371anti-parallel
Strand 3
b
353 356anti-parallel
Strand 4
b
336 347anti-parallel
Strand 5
b
429 433anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
185 187first strand
Strand 2
c
195 197anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
341 343first strand
Strand 2
c
349 351anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
370 371first strand
Strand 2
c
374 375anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
77 78first strand
Strand 2
d
173 174anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
o
30 31first strand
Strand 2
o
135 136anti-parallel
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There are 10 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
o
65 67first strand
Strand 2
o
38 53anti-parallel
Strand 3
o
232 245anti-parallel
Strand 4
o
210 220anti-parallel
Strand 5
o
192 205anti-parallel
Strand 6
o
141 149anti-parallel
Strand 7
o
126 128anti-parallel
Strand 8
o
93 101anti-parallel
Strand 9
o
78 87anti-parallel
Strand 10
o
38 53anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
o
69 70first strand
Strand 2
o
103 109anti-parallel
Strand 3
o
115 121anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
u
25 26first strand
Strand 2
u
82 83parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
v
9 11first strand
Strand 2
v
18 20anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il