Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V3M entry

There are 3 chains in PDB entry 5V3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 T 1 A 28
B
 T 1 A 28
C
 PRO 362THR 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5V3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
374 383Right-handed alpha
Helix 2
AA2
C
384 389Right-handed 310
Helix 3
AA3
C
402 415Right-handed alpha
Helix 4
AA4
C
430 438Right-handed alpha
Helix 5
AA5
C
438 443Right-handed alpha
Helix 6
AA6
C
458 467Right-handed alpha
Helix 7
AA7
C
486 499Right-handed alpha
Helix 8
AA8
C
514 522Right-handed alpha
Helix 9
AA9
C
522 527Right-handed alpha
Helix 10
AB1
C
542 555Right-handed alpha
Helix 11
AB2
C
570 578Right-handed alpha
Helix 12
AB3
C
598 610Right-handed alpha
Helix 13
AB4
C
626 634Right-handed alpha
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There are 8 sheets in PDB entry 5V3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 392first strand
Strand 2
C
399 400anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
419 420first strand
Strand 2
C
427 428anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
447 448first strand
Strand 2
C
455 456anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
475 476first strand
Strand 2
C
483 484anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
503 504first strand
Strand 2
C
511 512anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
531 532first strand
Strand 2
C
539 540anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
559 560first strand
Strand 2
C
567 568anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
615 616first strand
Strand 2
C
623 624anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il