Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V6Y entry

There are 3 chains in PDB entry 5V6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 2VAL 2129
B
LYS 3VAL 2129
C
GLU 5TYR 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 5V6Y. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
68 75Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
92 99Right-handed alpha
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
155 164Right-handed alpha
Helix 8
AA8
A
187 203Right-handed alpha
Helix 9
AA9
A
211 221Right-handed alpha
Helix 10
AB1
A
230 232Right-handed 310
Helix 11
AB2
A
233 240Right-handed alpha
Helix 12
AB3
A
274 285Right-handed alpha
Helix 13
AB4
A
288 299Right-handed alpha
Helix 14
AB5
A
306 314Right-handed alpha
Helix 15
AB6
A
316 329Right-handed alpha
Helix 16
AB7
A
337 355Right-handed alpha
Helix 17
AB8
A
358 372Right-handed alpha
Helix 18
AB9
A
1024 1028Right-handed 310
Helix 19
AC1
A
1029 1052Right-handed alpha
Helix 20
AC2
A
1053 1056Right-handed 310
Helix 21
AC3
A
1058 1081Right-handed alpha
Helix 22
AC4
A
1086 1101Right-handed alpha
Helix 23
AC5
A
2036 2055Right-handed alpha
Helix 24
AC6
A
2124 2128Right-handed 310
Helix 25
AC7
B
18 34Right-handed alpha
Helix 26
AC8
B
44 54Right-handed alpha
Helix 27
AC9
B
68 75Right-handed alpha
Helix 28
AD1
B
84 89Right-handed alpha
Helix 29
AD2
B
92 99Right-handed alpha
Helix 30
AD3
B
133 143Right-handed alpha
Helix 31
AD4
B
155 164Right-handed alpha
Helix 32
AD5
B
187 203Right-handed alpha
Helix 33
AD6
B
211 221Right-handed alpha
Helix 34
AD7
B
230 232Right-handed 310
Helix 35
AD8
B
233 240Right-handed alpha
Helix 36
AD9
B
274 285Right-handed alpha
Helix 37
AE1
B
288 299Right-handed alpha
Helix 38
AE2
B
306 314Right-handed alpha
Helix 39
AE3
B
316 329Right-handed alpha
Helix 40
AE4
B
337 355Right-handed alpha
Helix 41
AE5
B
358 372Right-handed alpha
Helix 42
AE6
B
1024 1028Right-handed 310
Helix 43
AE7
B
1029 1039Right-handed alpha
Helix 44
AE8
B
1039 1052Right-handed alpha
Helix 45
AE9
B
1053 1056Right-handed 310
Helix 46
AF1
B
1058 1081Right-handed alpha
Helix 47
AF2
B
1086 1101Right-handed alpha
Helix 48
AF3
B
2036 2055Right-handed alpha
Helix 49
AF4
B
2124 2128Right-handed 310
Helix 50
AF5
C
18 34Right-handed alpha
Helix 51
AF6
C
44 53Right-handed alpha
Helix 52
AF7
C
68 75Right-handed alpha
Helix 53
AF8
C
84 89Right-handed alpha
Helix 54
AF9
C
92 99Right-handed alpha
Helix 55
AG1
C
130 132Right-handed 310
Helix 56
AG2
C
133 143Right-handed alpha
Helix 57
AG3
C
155 164Right-handed alpha
Helix 58
AG4
C
187 203Right-handed alpha
Helix 59
AG5
C
211 221Right-handed alpha
Helix 60
AG6
C
230 232Right-handed 310
Helix 61
AG7
C
233 240Right-handed alpha
Helix 62
AG8
C
274 285Right-handed alpha
Helix 63
AG9
C
288 299Right-handed alpha
Helix 64
AH1
C
306 315Right-handed alpha
Helix 65
AH2
C
316 328Right-handed alpha
Helix 66
AH3
C
337 354Right-handed alpha
Helix 67
AH4
C
358 370Right-handed alpha
Helix 68
AH5
C
1032 1039Right-handed alpha
Helix 69
AH6
C
1039 1052Right-handed alpha
Helix 70
AH7
C
1053 1056Right-handed 310
Helix 71
AH8
C
1062 1081Right-handed alpha
Helix 72
AH9
C
1086 1101Right-handed alpha
Helix 73
AI1
C
2036 2055Right-handed alpha
Helix 74
AI2
D
18 34Right-handed alpha
Helix 75
AI3
D
44 53Right-handed alpha
Helix 76
AI4
D
54 56Right-handed 310
Helix 77
AI5
D
68 75Right-handed alpha
Helix 78
AI6
D
84 89Right-handed alpha
Helix 79
AI7
D
92 99Right-handed alpha
Helix 80
AI8
D
133 143Right-handed alpha
Helix 81
AI9
D
155 164Right-handed alpha
Helix 82
AJ1
D
187 203Right-handed alpha
Helix 83
AJ2
D
211 221Right-handed alpha
Helix 84
AJ3
D
230 232Right-handed 310
Helix 85
AJ4
D
233 240Right-handed alpha
Helix 86
AJ5
D
274 285Right-handed alpha
Helix 87
AJ6
D
288 299Right-handed alpha
Helix 88
AJ7
D
306 314Right-handed alpha
Helix 89
AJ8
D
316 329Right-handed alpha
Helix 90
AJ9
D
337 355Right-handed alpha
Helix 91
AK1
D
358 372Right-handed alpha
Helix 92
AK2
D
1024 1028Right-handed 310
Helix 93
AK3
D
1029 1052Right-handed alpha
Helix 94
AK4
D
1053 1056Right-handed 310
Helix 95
AK5
D
1058 1081Right-handed alpha
Helix 96
AK6
D
1086 1101Right-handed alpha
Helix 97
AK7
D
2037 2055Right-handed alpha
Helix 98
AK8
E
43 48Right-handed alpha
Helix 99
AK9
F
43 48Right-handed alpha
Helix 100
AL1
H
43 48Right-handed alpha
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There are 36 sheets in PDB entry 5V6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 12parallel
Strand 3
A
61 65parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
303 304anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 12parallel
Strand 3
A
61 65parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
330 331parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 149first strand
Strand 2
A
224 229parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
244 247anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 174first strand
Strand 2
A
177 184anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
251 252first strand
Strand 2
A
255 256anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2064 2065first strand
Strand 2
A
2078 2079anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2068 2069first strand
Strand 2
A
2074 2075anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2082 2087first strand
Strand 2
A
2100 2105anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 40first strand
Strand 2
B
8 12parallel
Strand 3
B
61 65parallel
Strand 4
B
260 268anti-parallel
Strand 5
B
108 113anti-parallel
Strand 6
B
303 304anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 40first strand
Strand 2
B
8 12parallel
Strand 3
B
61 65parallel
Strand 4
B
260 268anti-parallel
Strand 5
B
330 331parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 101first strand
Strand 2
B
104 105anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 149first strand
Strand 2
B
224 229parallel
Strand 3
B
116 120anti-parallel
Strand 4
B
244 247anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 174first strand
Strand 2
B
177 184anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
251 252first strand
Strand 2
B
255 256anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2064 2065first strand
Strand 2
B
2078 2079anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2068 2069first strand
Strand 2
B
2074 2075anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2082 2087first strand
Strand 2
B
2100 2105anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 40first strand
Strand 2
C
9 12parallel
Strand 3
C
61 65parallel
Strand 4
C
260 268anti-parallel
Strand 5
C
108 113anti-parallel
Strand 6
C
303 304anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 40first strand
Strand 2
C
9 12parallel
Strand 3
C
61 65parallel
Strand 4
C
260 268anti-parallel
Strand 5
C
330 331parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 101first strand
Strand 2
C
104 105anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
147 149first strand
Strand 2
C
224 229parallel
Strand 3
C
116 120anti-parallel
Strand 4
C
244 247anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
172 174first strand
Strand 2
C
177 179anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
251 252first strand
Strand 2
C
255 256anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2064 2065first strand
Strand 2
C
2078 2079anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2068 2069first strand
Strand 2
C
2074 2075anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2082 2087first strand
Strand 2
C
2100 2105anti-parallel
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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
37 40first strand
Strand 2
D
9 12parallel
Strand 3
D
61 65parallel
Strand 4
D
260 268anti-parallel
Strand 5
D
108 113anti-parallel
Strand 6
D
303 304anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
37 40first strand
Strand 2
D
9 12parallel
Strand 3
D
61 65parallel
Strand 4
D
260 268anti-parallel
Strand 5
D
330 331parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
100 101first strand
Strand 2
D
104 105anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
147 149first strand
Strand 2
D
224 229parallel
Strand 3
D
116 120anti-parallel
Strand 4
D
244 247anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
171 174first strand
Strand 2
D
177 183anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
251 252first strand
Strand 2
D
255 256anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2064 2065first strand
Strand 2
D
2078 2079anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2068 2069first strand
Strand 2
D
2074 2075anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2082 2087first strand
Strand 2
D
2100 2105anti-parallel
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