Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8V entry

There are 2 chains in PDB entry 5V8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 70ARG 406
B
GLY 70ARG 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5V8V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
121 127Right-handed alpha
Helix 2
AA2
A
131 135Right-handed 310
Helix 3
AA3
A
181 186Right-handed alpha
Helix 4
AA4
A
198 206Right-handed 310
Helix 5
AA5
A
208 216Right-handed alpha
Helix 6
AA6
A
248 250Right-handed 310
Helix 7
AA7
A
301 313Right-handed alpha
Helix 8
AA8
A
326 328Right-handed 310
Helix 9
AA9
A
346 351Right-handed alpha
Helix 10
AB1
A
382 387Right-handed alpha
Helix 11
AB2
B
122 127Right-handed alpha
Helix 12
AB3
B
131 135Right-handed 310
Helix 13
AB4
B
181 186Right-handed alpha
Helix 14
AB5
B
198 206Right-handed 310
Helix 15
AB6
B
208 216Right-handed alpha
Helix 16
AB7
B
248 250Right-handed 310
Helix 17
AB8
B
301 313Right-handed alpha
Helix 18
AB9
B
326 331Right-handed 310
Helix 19
AC1
B
346 351Right-handed alpha
Helix 20
AC2
B
382 387Right-handed alpha
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There are 12 sheets in PDB entry 5V8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 148first strand
Strand 2
A
153 165anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
74 81anti-parallel
Strand 5
A
240 244anti-parallel
Strand 6
A
223 228anti-parallel
Strand 7
A
389 394anti-parallel
Strand 8
A
399 405anti-parallel
Strand 9
A
252 260anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 148first strand
Strand 2
A
153 165anti-parallel
Strand 3
A
168 179anti-parallel
Strand 4
A
110 113parallel
Strand 5
A
192 195anti-parallel
Strand 6
A
97 104parallel
Strand 7
A
85 92anti-parallel
Strand 8
A
74 81anti-parallel
Strand 9
A
240 244anti-parallel
Strand 10
A
223 228anti-parallel
Strand 11
A
389 394anti-parallel
Strand 12
A
399 405anti-parallel
Strand 13
A
252 260anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 271first strand
Strand 2
A
287 291anti-parallel
Strand 3
A
379 381parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
279 282first strand
Strand 2
A
273 276anti-parallel
Strand 3
A
334 338anti-parallel
Strand 4
A
341 345anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
298 300first strand
Strand 2
A
366 368parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
315 316first strand
Strand 2
A
321 324anti-parallel
Strand 3
A
361 363anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
139 149first strand
Strand 2
B
152 165anti-parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
74 81anti-parallel
Strand 5
B
240 244anti-parallel
Strand 6
B
223 228anti-parallel
Strand 7
B
389 394anti-parallel
Strand 8
B
399 405anti-parallel
Strand 9
B
252 260anti-parallel
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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
139 149first strand
Strand 2
B
152 165anti-parallel
Strand 3
B
168 179anti-parallel
Strand 4
B
110 113parallel
Strand 5
B
192 195anti-parallel
Strand 6
B
97 104parallel
Strand 7
B
85 92anti-parallel
Strand 8
B
74 81anti-parallel
Strand 9
B
240 244anti-parallel
Strand 10
B
223 228anti-parallel
Strand 11
B
389 394anti-parallel
Strand 12
B
399 405anti-parallel
Strand 13
B
252 260anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
279 282first strand
Strand 2
B
268 276anti-parallel
Strand 3
B
334 338anti-parallel
Strand 4
B
341 345anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
279 282first strand
Strand 2
B
268 276anti-parallel
Strand 3
B
287 291anti-parallel
Strand 4
B
379 381parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
298 300first strand
Strand 2
B
366 368parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
315 316first strand
Strand 2
B
321 324anti-parallel
Strand 3
B
361 363anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il