Analysis of interatomic Contacts of Structural Units in PDB entry:
5VD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VD3 entry

There is 1 chain in PDB entry 5VD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -11ARG 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5VD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-11 -7Right-handed 310
Helix 2
AA2
A
104 109Right-handed alpha
Helix 3
AA3
A
147 165Right-handed alpha
Helix 4
AA4
A
193 202Right-handed alpha
Helix 5
AA5
A
206 227Right-handed alpha
Helix 6
AA6
A
270 274Right-handed 310
Helix 7
AA7
A
275 281Right-handed 310
Helix 8
AA8
A
285 302Right-handed alpha
Helix 9
AA9
A
308 316Right-handed alpha
Helix 10
AB1
A
321 326Right-handed alpha
Helix 11
AB2
A
329 340Right-handed alpha
Helix 12
AB3
A
349 355Right-handed alpha
Helix 13
AB4
A
356 360Right-handed 310
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There are 3 sheets in PDB entry 5VD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
173 179anti-parallel
Strand 3
A
182 188anti-parallel
Strand 4
A
135 141anti-parallel
Strand 5
A
122 129anti-parallel
Strand 6
A
110 119anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il