Analysis of interatomic Contacts of Structural Units in PDB entry:
5VGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VGR entry

There are 2 chains in PDB entry 5VGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22PHE 438
B
 SER 22ILE 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5VGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 51Right-handed alpha
Helix 2
AA2
A
72 89Right-handed alpha
Helix 3
AA3
A
156 167Right-handed alpha
Helix 4
AA4
A
179 185Right-handed alpha
Helix 5
AA5
A
186 201Right-handed alpha
Helix 6
AA6
A
224 236Right-handed alpha
Helix 7
AA7
A
243 251Right-handed alpha
Helix 8
AA8
A
252 256Right-handed alpha
Helix 9
AA9
A
269 274Right-handed alpha
Helix 10
AB1
A
281 285Right-handed 310
Helix 11
AB2
A
286 302Right-handed alpha
Helix 12
AB3
A
317 332Right-handed alpha
Helix 13
AB4
A
339 372Right-handed alpha
Helix 14
AB5
A
379 401Right-handed alpha
Helix 15
AB6
A
406 435Right-handed alpha
Helix 16
AB7
B
42 51Right-handed alpha
Helix 17
AB8
B
72 89Right-handed alpha
Helix 18
AB9
B
156 166Right-handed alpha
Helix 19
AC1
B
179 185Right-handed alpha
Helix 20
AC2
B
186 188Right-handed 310
Helix 21
AC3
B
189 201Right-handed alpha
Helix 22
AC4
B
224 236Right-handed alpha
Helix 23
AC5
B
243 256Right-handed alpha
Helix 24
AC6
B
269 274Right-handed alpha
Helix 25
AC7
B
281 285Right-handed 310
Helix 26
AC8
B
286 302Right-handed alpha
Helix 27
AC9
B
303 306Right-handed 310
Helix 28
AD1
B
317 330Right-handed alpha
Helix 29
AD2
B
339 361Right-handed alpha
Helix 30
AD3
B
387 401Right-handed alpha
Helix 31
AD4
B
406 418Right-handed alpha
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There are 6 sheets in PDB entry 5VGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
135 145anti-parallel
Strand 5
A
126 129anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
135 145anti-parallel
Strand 5
A
60 68parallel
Strand 6
A
169 175parallel
Strand 7
A
205 213parallel
Strand 8
A
257 264parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
314 315anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
135 145anti-parallel
Strand 5
B
126 129anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
135 145anti-parallel
Strand 5
B
59 68parallel
Strand 6
B
169 175parallel
Strand 7
B
205 213parallel
Strand 8
B
257 264parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
314 315anti-parallel
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