Analysis of interatomic Contacts of Structural Units in PDB entry:
5VQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VQ9 entry

There is 1 chain in PDB entry 5VQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 PRO 19ALA 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5VQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
34 50Right-handed alpha
Helix 2
AA2
D
63 69Right-handed alpha
Helix 3
AA3
D
134 139Right-handed alpha
Helix 4
AA4
D
144 163Right-handed alpha
Helix 5
AA5
D
184 200Right-handed alpha
Helix 6
AA6
D
228 241Right-handed alpha
Helix 7
AA7
D
254 260Right-handed alpha
Helix 8
AA8
D
273 288Right-handed alpha
Helix 9
AA9
D
308 313Right-handed alpha
Helix 10
AB1
D
323 341Right-handed alpha
Helix 11
AB2
D
352 359Right-handed alpha
Helix 12
AB3
D
367 380Right-handed alpha
Helix 13
AB4
D
384 399Right-handed alpha
Helix 14
AB5
D
406 430Right-handed alpha
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There are 2 sheets in PDB entry 5VQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 58first strand
Strand 2
D
70 76anti-parallel
Strand 3
D
20 27anti-parallel
Strand 4
D
94 101parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
206 212anti-parallel
Strand 3
D
245 251parallel
Strand 4
D
293 299parallel
Strand 5
D
174 178parallel
Strand 6
D
315 318parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il